| Name | contactin associated protein-like 3B |
| Description | Predicted to be involved in cell adhesion. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The CNTNAP3 gene family, which includes isoforms commonly referred to as Caspr3 or CNTNAP3 (and in one case CNTNAP3B), encodes neural cell adhesion molecules that play multifaceted roles in both the nervous system and other tissues. In the brain, CNTNAP3 proteins contribute to the regulation of synapse development and function. Disruption of CNTNAP3 in mice leads to impaired motor learning, altered dorsal striatal activity, and behavioral abnormalities relevant to autism spectrum disorder and related neuropsychiatric conditions, suggesting that proper CNTNAP3 expression is critical for the establishment and maintenance of functional neural networks."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, interactions between CNTNAP3 and extracellular ligands—such as the demonstrated binding with neuregulin 3—suggest a role in modulating dopamine axonal signaling and synaptic plasticity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Outside the central nervous system, genomic studies have implicated alterations at the CNTNAP3 locus in testicular germ cell tumor predisposition"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", and CNTNAP3 expression has been identified as a marker for brown adipocyte progenitors, suggesting an involvement in metabolic differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, a circular RNA derived from CNTNAP3 has been shown to act in a tumor‐suppressive manner in esophageal squamous cell carcinoma by modulating p53 expression through miRNA sponging"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": ", and CNTNAP3 has recently been linked to the regulation of autophagy, where its upregulation of ATG16L1 promotes autophagic vacuole formation in Crohn’s disease contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Finally, the CNTNAP3B variant has been found to be upregulated in chronic fibrosing idiopathic interstitial pneumonia, implicating it as a potential player in processes such as extracellular matrix interactions and tissue remodeling during disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, CNTNAP3 proteins—including the CNTNAP3B isoform—function as key molecular components in neural development, synaptic differentiation, and network modulation, while also influencing tumor suppression, autophagy, and cellular differentiation in non‐neuronal tissues. These diverse roles underline the potential of CNTNAP3 as a target for further biomedical research across neurological, oncological, and inflammatory conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Haruna Hirata, Aki Takahashi, Yasushi Shimoda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Caspr3-Deficient Mice Exhibit Low Motor Learning during the Early Phase of the Accelerated Rotarod Task."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0147887"}], "href": "https://doi.org/10.1371/journal.pone.0147887"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26807827"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26807827"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Da-Li Tong, Rui-Guo Chen, Yu-Lan Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The critical role of ASD-related gene CNTNAP3 in regulating synaptic development and social behavior in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurobiol Dis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.nbd.2019.104486"}], "href": "https://doi.org/10.1016/j.nbd.2019.104486"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31150793"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31150793"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mitsuo Okita, Yuta Yoshino, Jun-Ichi Iga, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated mRNA expression of CASPR3 in patients with schizophrenia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nord J Psychiatry (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/08039488.2017.1291720"}], "href": "https://doi.org/10.1080/08039488.2017.1291720"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28413940"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28413940"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Haruna Hirata, Juzoh Umemori, Hiroki Yoshioka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cell adhesion molecule contactin-associated protein 3 is expressed in the mouse basal ganglia during early postnatal stages."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jnr.23670"}], "href": "https://doi.org/10.1002/jnr.23670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26389685"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26389685"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wanpeng Cui, Nannan Gao, Zhaoqi Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "In trans neuregulin3-Caspr3 interaction controls DA axonal bassoon cluster development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cub.2021.05.045"}], "href": "https://doi.org/10.1016/j.cub.2021.05.045"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34143959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34143959"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Sara Martoreli Silveira, Isabela Werneck da Cunha, Fabio Albuquerque Marchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic screening of testicular germ cell tumors from monozygotic twins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Orphanet J Rare Dis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13023-014-0181-x"}], "href": "https://doi.org/10.1186/s13023-014-0181-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25424124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25424124"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "D Tews, V Schwar, M Scheithauer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comparative gene array analysis of progenitor cells from human paired deep neck and subcutaneous adipose tissue."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Endocrinol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mce.2014.07.011"}], "href": "https://doi.org/10.1016/j.mce.2014.07.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25102227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25102227"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Hui Wang, Xuming Song, Yajing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CircCNTNAP3-TP53-positive feedback loop suppresses malignant progression of esophageal squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-020-03217-y"}], "href": "https://doi.org/10.1038/s41419-020-03217-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33239613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33239613"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yu Qi Qiao, Mei Lan Huang, Qing Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CNTNAP3 associated ATG16L1 expression and Crohn's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mediators Inflamm (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2015/404185"}], "href": "https://doi.org/10.1155/2015/404185"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25883416"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25883416"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yasushi Horimasu, Nobuhisa Ishikawa, Masaya Taniwaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gene expression profiling of idiopathic interstitial pneumonias (IIPs): identification of potential diagnostic markers and therapeutic targets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12881-017-0449-9"}], "href": "https://doi.org/10.1186/s12881-017-0449-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28821283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28821283"}]}]}]}
|
| Proteins | CNT3B_HUMAN |
| NCBI Gene ID | 728577 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CNTNAP3B has 2,962 functional associations with biological entities spanning 8 categories (molecular profile, organism, chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 58 datasets.
Click the + buttons to view associations for CNTNAP3B from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CNTNAP3B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of CNTNAP3B gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of CNTNAP3B gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of CNTNAP3B gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of CNTNAP3B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of CNTNAP3B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of CNTNAP3B gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing CNTNAP3B protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with CNTNAP3B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of CNTNAP3B gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with CNTNAP3B gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by CNTNAP3B gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with CNTNAP3B gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at CNTNAP3B gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of CNTNAP3B gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of CNTNAP3B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of CNTNAP3B gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing CNTNAP3B from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of CNTNAP3B gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of CNTNAP3B gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of CNTNAP3B gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of CNTNAP3B gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GlyGen Glycosylated Proteins | ligands (chemical) binding CNTNAP3B protein from the GlyGen Glycosylated Proteins dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of CNTNAP3B gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CNTNAP3B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of CNTNAP3B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CNTNAP3B gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of CNTNAP3B gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of CNTNAP3B gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of CNTNAP3B gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CNTNAP3B gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HPM Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of CNTNAP3B protein relative to other cell types and tissues from the HPM Cell Type and Tissue Protein Expression Profiles dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of CNTNAP3B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of CNTNAP3B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of CNTNAP3B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain CNTNAP3B protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting CNTNAP3B gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of CNTNAP3B gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of CNTNAP3B gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of CNTNAP3B gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| NURSA Protein Complexes | protein complexs containing CNTNAP3B protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for CNTNAP3B from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of CNTNAP3B gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of CNTNAP3B gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of CNTNAP3B gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at CNTNAP3B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of CNTNAP3B gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of CNTNAP3B gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of CNTNAP3B gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tabula Sapiens Gene-Cell Associations | cell types with high or low expression of CNTNAP3B gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of CNTNAP3B gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of CNTNAP3B gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of CNTNAP3B gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of CNTNAP3B protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CNTNAP3B protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of CNTNAP3B protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CNTNAP3B protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with CNTNAP3B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |