| Name | colorectal cancer associated 2 |
| Description | Enables DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have implicated "}, {"type": "b", "children": [{"type": "t", "text": "COLCA2"}]}, {"type": "t", "text": " (also known as C11orf93) as a functionally relevant gene at chromosome 11q23.1 that may influence colorectal cancer (CRC) risk. Genetic association analyses have shown that risk‐related variants—particularly rs3802842 and other linked single‐nucleotide polymorphisms—correlate with altered COLCA2 expression in both normal and tumor colonic tissues, and with changes in local lymphocyte density and inflammatory pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n COLCA2 protein is expressed in the cytoplasm of epithelial, immune, and other cell types, suggesting that it may operate at the interface between epithelial cell function and immune regulation in the colon. Such dual localization supports a role for COLCA2 in modulating both tumor cell behavior and the local immune microenvironment during colon tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Functional assays indicate that regulatory elements—including enhancers and bidirectional promoters—in this genetic locus are modulated by risk variants and epigenetic mechanisms like DNA methylation. These regulatory effects ultimately alter COLCA2 expression levels, further linking it to CRC susceptibility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}, {"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, studies of microRNA function have identified COLCA2 as a potential target of miR‑375, implicating it in the control of cell proliferation and suggesting a role in tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings support a model in which COLCA2 acts as a mediator linking inherited genetic variation to pathways of immune modulation and epithelial cell regulation in colorectal cancer, with possible broader implications for other inflammatory or immune‐mediated conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}, {"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Vanya D Peltekova, Mathieu Lemire, Aamer M Qazi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.28557"}], "href": "https://doi.org/10.1002/ijc.28557"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24154973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24154973"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Michela Biancolella, Barbara K Fortini, Stephanie Tring, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddt584"}], "href": "https://doi.org/10.1093/hmg/ddt584"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24256810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24256810"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Adria Closa, David Cordero, Rebeca Sanz-Pamplona, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of candidate susceptibility genes for colorectal cancer through eQTL analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Carcinogenesis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/carcin/bgu092"}], "href": "https://doi.org/10.1093/carcin/bgu092"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24760461"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24760461"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yuki Hitomi, Yoshihiro Aiba, Yosuke Kawai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "rs1944919 on chromosome 11q23.1 and its effector genes COLCA1/COLCA2 confer susceptibility to primary biliary cholangitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-84042-x"}], "href": "https://doi.org/10.1038/s41598-021-84042-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33633225"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33633225"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "S Noci, M Dugo, F Bertola, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A subset of genetic susceptibility variants for colorectal cancer also has prognostic value."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pharmacogenomics J (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/tpj.2015.35"}], "href": "https://doi.org/10.1038/tpj.2015.35"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25963333"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25963333"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xuan Zhou, Lijuan Wang, Jiarui Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alcohol consumption, DNA methylation and colorectal cancer risk: Results from pooled cohort studies and Mendelian randomization analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.33945"}], "href": "https://doi.org/10.1002/ijc.33945"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35102554"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35102554"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Jia Guo, Xin Liu, Yuwei Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-375 down-regulation of the rearranged L-myc fusion and hypoxia-induced gene domain protein 1A genes and effects on Sertoli cell proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Asian-Australas J Anim Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.5713/ajas.17.0338"}], "href": "https://doi.org/10.5713/ajas.17.0338"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29514449"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29514449"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Pin Tong, Jack Monahan, James G D Prendergast "}, {"type": "b", "children": [{"type": "t", "text": "Shared regulatory sites are abundant in the human genome and shed light on genome evolution and disease pleiotropy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1006673"}], "href": "https://doi.org/10.1371/journal.pgen.1006673"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28282383"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28282383"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Tarjinder Singh, Adam P Levine, Philip J Smith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of expression quantitative trait loci in the human colon."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Inflamm Bowel Dis (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MIB.0000000000000265"}], "href": "https://doi.org/10.1097/MIB.0000000000000265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25569741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25569741"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Chih-Yung Yang, Ruey-Hwa Lu, Chien-Hsing Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Single nucleotide polymorphisms associated with colorectal cancer susceptibility and loss of heterozygosity in a Taiwanese population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0100060"}], "href": "https://doi.org/10.1371/journal.pone.0100060"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24968322"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24968322"}]}]}]}
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| Synonyms | C11ORF93, CASC13, LOH11CR1G |
| Proteins | COLC2_HUMAN |
| NCBI Gene ID | 120376 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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COLCA2 has 2,426 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 50 datasets.
Click the + buttons to view associations for COLCA2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of COLCA2 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of COLCA2 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of COLCA2 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of COLCA2 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of COLCA2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of COLCA2 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of COLCA2 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of COLCA2 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing COLCA2 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| CTD Gene-Disease Associations | diseases associated with COLCA2 gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with COLCA2 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by COLCA2 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with COLCA2 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with COLCA2 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with COLCA2 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at COLCA2 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of COLCA2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of COLCA2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GAD Gene-Disease Associations | diseases associated with COLCA2 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with COLCA2 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing COLCA2 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of COLCA2 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing COLCA2 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing COLCA2 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by COLCA2 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of COLCA2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of COLCA2 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with COLCA2 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with COLCA2 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of COLCA2 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of COLCA2 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with COLCA2 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of COLCA2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of COLCA2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with COLCA2 gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain COLCA2 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by COLCA2 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of COLCA2 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of COLCA2 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at COLCA2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of COLCA2 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of COLCA2 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of COLCA2 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of COLCA2 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with COLCA2 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |