| Name | CSAG family, member 3 |
| Description | Predicted to be involved in response to xenobiotic stimulus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTRAG‐3—also referred to as CSAG3 in the context of cancer testis antigens—was originally identified as a taxol resistance–associated gene isolated from ovarian carcinoma cells. In normal tissues it is either undetectable or expressed only at low levels except in the testis, where its mRNA is abundant; however, it is frequently re‐expressed in tumors. Epigenetic regulation through DNA methylation plays a key role in this phenomenon, with hypermethylation silencing TRAG‐3 in normal cells and hypomethylation correlating with its activation in tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role as a tumor antigen, TRAG‐3 expression is linked with tumor progression and chemoresistance. Elevated levels of TRAG‐3 are observed in advanced stages of cancers such as bladder, gastrointestinal, melanoma, and breast carcinomas, where its overexpression correlates with resistance to antimicrotubule agents (e.g., taxol, docetaxel, paclitaxel, and vinblastine). Additionally, spontaneous interferon‑γ–producing CD4+ T cell responses against a single immunodominant epitope of TRAG‐3 have been documented in patients with metastatic melanoma and breast cancer, highlighting its immunogenic potential as a target for cancer vaccines."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, investigations into the CSAG gene family reveal that members sharing related promoter elements display conserved expression patterns and evolutionary relationships. In this context, studies of proteins such as CSAG2—which directly activates the NAD+‑dependent deacetylase SIRT1 to promote deacetylation of p53 and enhance cell survival under genotoxic stress—and analyses of conserved promoter‐like elements in CSAG family members suggest that CSAG3 may similarly be part of a broader genetic program involved in tumor cell survival and progression. Such findings support the concept that these cancer/testis antigens not only serve as immunological targets, but may also contribute functionally to oncogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiaoming Yao, Ji-Fan Hu, Tao Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Epigenetic regulation of the taxol resistance-associated gene TRAG-3 in human tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Genet Cytogenet (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cancergencyto.2003.08.021"}], "href": "https://doi.org/10.1016/j.cancergencyto.2003.08.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15120907"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15120907"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mitsuhiko Ohta, Fumiaki Tanaka, Noriaki Sadanaga, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of the TRAG-3 gene in human esophageal cancer: the frequent synchronous expression of MAGE-3 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2006)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16685391"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16685391"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Bratislav Janjic, Pedro Andrade, Xiao-Fei Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spontaneous CD4+ T cell responses against TRAG-3 in patients with melanoma and breast cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.177.4.2717"}], "href": "https://doi.org/10.4049/jimmunol.177.4.2717"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16888034"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16888034"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jose A Karam, Sandra Huang, Jinhai Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of TRAG3 gene in urothelial carcinoma of the bladder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.25631"}], "href": "https://doi.org/10.1002/ijc.25631"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20734393"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20734393"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Martin A Hansen, John E Nielsen, Dorota Retelska, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Reprod Dev (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/mrd.20651"}], "href": "https://doi.org/10.1002/mrd.20651"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17342728"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17342728"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xu Yang, Patrick Ryan Potts "}, {"type": "b", "children": [{"type": "t", "text": "CSAG2 is a cancer-specific activator of SIRT1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embr.202050912"}], "href": "https://doi.org/10.15252/embr.202050912"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32761762"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32761762"}]}]}]}
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| Synonyms | CT24.2, CSAG3A |
| NCBI Gene ID | 389903 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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CSAG3 has 2,096 functional associations with biological entities spanning 7 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 35 datasets.
Click the + buttons to view associations for CSAG3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of CSAG3 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of CSAG3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of CSAG3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of CSAG3 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of CSAG3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of CSAG3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of CSAG3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with CSAG3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of CSAG3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with CSAG3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with CSAG3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with CSAG3 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of CSAG3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of CSAG3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing CSAG3 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of CSAG3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of CSAG3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving CSAG3 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of CSAG3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of CSAG3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of CSAG3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of CSAG3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of CSAG3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of CSAG3 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of CSAG3 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of CSAG3 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of CSAG3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of CSAG3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of CSAG3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of CSAG3 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of CSAG3 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of CSAG3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of CSAG3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with CSAG3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with CSAG3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |