CSAG4 Gene

Name CSAG family, member 4 (pseudogene)
Summary
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These works delineate how loss or inactivation of VHL leads to stabilization of HIF isoforms that drive changes in gene expression associated with tumorigenesis, angiogenesis, and cellular differentiation in renal, cardiac, skeletal, and immune systems."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "27"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn striking contrast to the extensive exploration of VHL-mediated molecular pathways, none of the reviewed abstracts mention CSAG4 or provide insights into its biological function. Despite detailing a range of mechanisms related to oxygen sensing, ubiquitin ligase activity, and downstream transcriptional and metabolic modulation, the current literature does not address any role for CSAG4 in these contexts. As such, no information about CSAG4’s activity, regulation, or association with the VHL/HIF axis is available from these studies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "27"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, although the presented body of work significantly advances our understanding of VHL-dependent control over hypoxic responses and related signaling pathways in both normal physiology and tumorigenesis, it does not encompass any investigation into the function of CSAG4. Consequently, the role of CSAG4 remains to be elucidated, and further targeted studies will be necessary to determine whether CSAG4 plays any part in these crucial biological processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "27"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Keiichi Kondo, William Y Kim, Mirna Lechpammer, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Deletion of Vhlh in chondrocytes reduces cell proliferation and increases matrix deposition during growth plate development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01138"}], "href": "https://doi.org/10.1242/dev.01138"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15128677"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15128677"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Fiona A Mack, Jagruti H Patel, Mangatt P Biju, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Decreased growth of Vhl-/- fibrosarcomas is associated with elevated levels of cyclin kinase inhibitors p21 and p27."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.11.4565-4578.2005"}], "href": "https://doi.org/10.1128/MCB.25.11.4565-4578.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15899860"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15899860"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Karim Mekhail, Mireille Khacho, Amanda Carrigan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of ubiquitin ligase dynamics by the nucleolus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200506030"}], "href": "https://doi.org/10.1083/jcb.200506030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16129783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16129783"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Nan Tang, Fiona Mack, Volker H Haase, et al. "}, {"type": "b", "children": [{"type": "t", "text": "pVHL function is essential for endothelial extracellular matrix deposition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.26.7.2519-2530.2006"}], "href": "https://doi.org/10.1128/MCB.26.7.2519-2530.2006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16537898"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16537898"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mei Ding, Shiying Cui, Chengjin Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Failure to prolyl hydroxylate hypoxia-inducible factor alpha phenocopies VHL inactivation in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.emboj.7601300"}], "href": "https://doi.org/10.1038/sj.emboj.7601300"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16977322"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16977322"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Claudio R Thoma, Ian J Frew, Christian R Hoerner, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "pVHL and PTEN tumour suppressor proteins cooperatively suppress kidney cyst formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2008.96"}], "href": "https://doi.org/10.1038/emboj.2008.96"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18497742"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18497742"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "James Cantley, Colin Selman, Deepa Shukla, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The von Hippel-Lindau Chuvash mutation promotes pulmonary hypertension and fibrosis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI36362"}], "href": "https://doi.org/10.1172/JCI36362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20197624"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20197624"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Ruth E Schietke, Thomas Hackenbeck, Maxine Tran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Renal tubular HIF-2α expression requires VHL inactivation and causes fibrosis and cysts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0031034"}], "href": "https://doi.org/10.1371/journal.pone.0031034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22299048"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22299048"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Sun-Hee Lee, Xiangguo Che, Jae-Hwan Jeong, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Combined mutation of Vhl and Trp53 causes renal cysts and tumours in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Mol Med (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/emmm.201202231"}], "href": "https://doi.org/10.1002/emmm.201202231"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23606570"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23606570"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Shan-Shan Wang, Yi-Feng Gu, Nicholas Wolff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1414789111"}], "href": "https://doi.org/10.1073/pnas.1414789111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25359211"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25359211"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Jee H Lee, Chris Elly, Yoon Park, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Combined mutation in Vhl, Trp53 and Rb1 causes clear cell renal cell carcinoma in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Med (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nm.4343"}], "href": "https://doi.org/10.1038/nm.4343"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28553932"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28553932"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Sean T Bailey, Aleisha M Smith, Jordan Kardos, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MYC activation cooperates with Vhl and Ink4a/Arf loss to induce clear cell renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms15770"}], "href": "https://doi.org/10.1038/ncomms15770"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28593993"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28593993"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Judit Espana-Agusti, Anne Warren, Su Kit Chew, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of PBRM1 rescues VHL dependent replication stress to promote renal carcinogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-017-02245-1"}], "href": "https://doi.org/10.1038/s41467-017-02245-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29229903"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29229903"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Naomi Dirckx, Robert J Tower, Evi M Mercken, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vhl deletion in osteoblasts boosts cellular glycolysis and improves global glucose metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI97794"}], "href": "https://doi.org/10.1172/JCI97794"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29431735"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29431735"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Qian Li, Dulei Li, Xian Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E3 Ligase VHL Promotes Group 2 Innate Lymphoid Cell Maturation and Function via Glycolysis Inhibition and Induction of Interleukin-33 Receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunity (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.immuni.2017.12.013"}], "href": "https://doi.org/10.1016/j.immuni.2017.12.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29452935"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29452935"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Yangyang Zhu, Yanxia Zhao, Le Zou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The E3 ligase VHL promotes follicular helper T cell differentiation via glycolytic-epigenetic control."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20190337"}], "href": "https://doi.org/10.1084/jem.20190337"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31123085"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31123085"}]}]}]}
NCBI Gene ID 100130935
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Predicted Functions View CSAG4's ARCHS4 Predicted Functions.
Co-expressed Genes View CSAG4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CSAG4's ARCHS4 Predicted Functions.

Functional Associations

CSAG4 has 180 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 7 datasets.

Click the + buttons to view associations for CSAG4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CSAG4 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CSAG4 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CSAG4 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with CSAG4 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CSAG4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of CSAG4 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of CSAG4 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.