CTAG1A Gene

Name cancer/testis antigen 1A
Description The protein encoded by this gene is a tumor cell antigen found in various types of cancers, which makes it a good candidate for a cancer vaccine. This gene is also highly expressed in normal ovary and testis tissues. An identical copy of this gene is found on the same chromosome. [provided by RefSeq, Dec 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CTAG1A, which encodes the cancer/testis antigen NY‐ESO‐1, is normally restricted to germ cells yet is aberrantly expressed in a variety of human tumors—including melanoma, ovarian cancer, multiple myeloma, hepatocellular carcinoma, synovial sarcomas, and certain subtypes of breast cancer."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": " This anomalous expression renders NY‐ESO‐1 highly immunogenic and an attractive target for antigen‐specific immunotherapy, as evidenced by its ability to elicit spontaneous as well as vaccine‐induced CD8⁺ and CD4⁺ T‐cell responses along with humoral immunity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, the presence of NY‐ESO‐1–specific T cells correlates with favorable clinical outcomes and improves responses to immune checkpoint blockade, supporting combined therapeutic strategies that counter T‐cell exhaustion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Epigenetic mechanisms play a critical role in regulating CTAG1A expression; for example, a switch in promoter occupancy between the insulator protein CTCF and its paralogue BORIS facilitates its tumor‐restricted activation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Tumor cells display only limited numbers of NY‐ESO‐1‐derived peptide–MHC complexes on their membranes—often as few as 10–50 molecules per cell—yet these low levels are sufficient for recognition by high‐affinity T cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore the dual role of CTAG1A/NY‐ESO‐1 as both an immunogenic tumor marker and a functional driver of cytotoxic T‐cell responses. Its frequent expression in advanced disease and its ability to serve as a target for vaccines and adoptive T‐cell therapies highlight its importance in current and emerging immunotherapeutic approaches (1,2,3,4,5,6,7,8,9).\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Julien Fourcade, Zhaojun Sun, Mourad Benallaoua, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of Tim-3 and PD-1 expression is associated with tumor antigen-specific CD8+ T cell dysfunction in melanoma patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20100637"}], "href": "https://doi.org/10.1084/jem.20100637"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20819923"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20819923"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Junko Matsuzaki, Sacha Gnjatic, Paulette Mhawech-Fauceglia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor-infiltrating NY-ESO-1-specific CD8+ T cells are negatively regulated by LAG-3 and PD-1 in human ovarian cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1003345107"}], "href": "https://doi.org/10.1073/pnas.1003345107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20385810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20385810"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jin-Ping Lai, Paul F Robbins, Mark Raffeld, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NY-ESO-1 expression in synovial sarcoma and other mesenchymal tumors: significance for NY-ESO-1-based targeted therapy and differential diagnosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mod Pathol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/modpathol.2012.31"}], "href": "https://doi.org/10.1038/modpathol.2012.31"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22388761"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22388761"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yao-Tseng Chen, Dara S Ross, Rita Chiu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiple cancer/testis antigens are preferentially expressed in hormone-receptor negative and high-grade breast cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0017876"}], "href": "https://doi.org/10.1371/journal.pone.0017876"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21437249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21437249"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ian D Davis, Weisan Chen, Heather Jackson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Recombinant NY-ESO-1 protein with ISCOMATRIX adjuvant induces broad integrated antibody and CD4(+) and CD8(+) T cell responses in humans."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0403572101"}], "href": "https://doi.org/10.1073/pnas.0403572101"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15252201"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15252201"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Sacha Gnjatic, Djordje Atanackovic, Elke Jäger, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Survey of naturally occurring CD4+ T cell responses against NY-ESO-1 in cancer patients: correlation with antibody responses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1133324100"}], "href": "https://doi.org/10.1073/pnas.1133324100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12853579"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12853579"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Jianda Yuan, Matthew Adamow, Brian A Ginsberg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated NY-ESO-1 antibody and CD8+ T-cell responses correlate with clinical benefit in advanced melanoma patients treated with ipilimumab."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1110814108"}], "href": "https://doi.org/10.1073/pnas.1110814108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21933959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21933959"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Edmund K Moon, Raghuveer Ranganathan, Evgeniy Eruslanov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Blockade of Programmed Death 1 Augments the Ability of Human T Cells Engineered to Target NY-ESO-1 to Control Tumor Growth after Adoptive Transfer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Cancer Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1078-0432.CCR-15-1070"}], "href": "https://doi.org/10.1158/1078-0432.CCR-15-1070"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26324743"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26324743"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Julie A Hong, Yang Kang, Ziedulla Abdullaev, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reciprocal binding of CTCF and BORIS to the NY-ESO-1 promoter coincides with derepression of this cancer-testis gene in lung cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-05-0823"}], "href": "https://doi.org/10.1158/0008-5472.CAN-05-0823"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16140944"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16140944"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Marco A Purbhoo, Deborah H Sutton, Joanna E Brewer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Quantifying and imaging NY-ESO-1/LAGE-1-derived epitopes on tumor cells using high affinity T cell receptors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.176.12.7308"}], "href": "https://doi.org/10.4049/jimmunol.176.12.7308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16751374"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16751374"}]}]}]}
Synonyms LAGE2A
Proteins CTG1B_HUMAN
NCBI Gene ID 246100
API
Download Associations
Predicted Functions View CTAG1A's ARCHS4 Predicted Functions.
Co-expressed Genes View CTAG1A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CTAG1A's ARCHS4 Predicted Functions.

Functional Associations

CTAG1A has 685 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 36 datasets.

Click the + buttons to view associations for CTAG1A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CTAG1A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of CTAG1A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of CTAG1A gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing CTAG1A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with CTAG1A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DGIdb Drug Targets 2026 interacting drugs for CTAG1A protein from the DGIdb Drug Targets 2026 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with CTAG1A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with CTAG1A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with CTAG1A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with CTAG1A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CTAG1A gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CTAG1A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CTAG1A gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing CTAG1A from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CTAG1A gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of CTAG1A gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of CTAG1A gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2023 biological processes involving CTAG1A gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving CTAG1A gene from the curated GO Biological Process Annotations2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CTAG1A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of CTAG1A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of CTAG1A protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of CTAG1A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of CTAG1A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CTAG1A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of CTAG1A gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of CTAG1A gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Pathway Commons Protein-Protein Interactions interacting proteins for CTAG1A from the Pathway Commons Protein-Protein Interactions dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of CTAG1A gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of CTAG1A gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of CTAG1A gene from the RummaGEO Gene Perturbation Signatures dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of CTAG1A gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores tissues with high expression of CTAG1A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of CTAG1A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with CTAG1A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with CTAG1A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.