CYP4F35P Gene

HGNC Family Cytochrome P450s (CYP)
Name cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPDZD7 is a PDZ domain–containing scaffold protein that plays a crucial role in the inner ear by orchestrating the USH2 protein complex at the ankle links of developing cochlear hair cells. Studies using Pdzd7 knockout mouse models have demonstrated that the absence of PDZD7 leads to markedly disorganized stereocilia bundles, reduced mechanotransduction currents, and consequent congenital profound deafness, underscoring its essential role in auditory function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "PDZD7 also participates in specialized protein complexes by directly interacting with key partners such as MYO7A and, in an isoform-specific manner, with interactors like PIP5K1C. These interactions help ensure the precise localization and assembly of USH proteins at the ankle region and link the function of PDZD7 to the actin-based motor apparatus critical for normal stereocilia development and mechanotransduction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Further expanding its functional repertoire, additional novel PDZD7-binding proteins—including ADGRV1, gelsolin, and CADM1—have been identified through yeast two-hybrid screening. This broader interaction network suggests that PDZD7 is pivotal not only for scaffolding the USH2 complex but also for regulating cytoskeletal dynamics and trafficking events within inner ear hair cells, thereby contributing to both syndromic and nonsyndromic forms of hearing loss."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Junhuang Zou, Tihua Zheng, Chongyu Ren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of PDZD7 disrupts the Usher syndrome type 2 protein complex in cochlear hair cells and causes hearing loss in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddt629"}], "href": "https://doi.org/10.1093/hmg/ddt629"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24334608"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24334608"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Clive P Morgan, Jocelyn F Krey, M'hamed Grati, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PDZD7-MYO7A complex identified in enriched stereocilia membranes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.18312"}], "href": "https://doi.org/10.7554/eLife.18312"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27525485"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27525485"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Haibo Du, Linzhi Zou, Rui Ren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lack of PDZD7 long isoform disrupts ankle-link complex and causes hearing loss in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.201901657RR"}], "href": "https://doi.org/10.1096/fj.201901657RR"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31914662"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31914662"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Haibo Du, Rui Ren, Panpan Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Binding Partners of Deafness-Related Protein PDZD7."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neural Plast (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2018/2062346"}], "href": "https://doi.org/10.1155/2018/2062346"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29796015"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29796015"}]}]}]}
NCBI Gene ID 284233
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Download Associations
Predicted Functions View CYP4F35P's ARCHS4 Predicted Functions.
Co-expressed Genes View CYP4F35P's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CYP4F35P's ARCHS4 Predicted Functions.

Functional Associations

CYP4F35P has 548 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for CYP4F35P from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CYP4F35P gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of CYP4F35P gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CYP4F35P gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CYP4F35P gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CYP4F35P gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CYP4F35P gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CYP4F35P gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CYP4F35P gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CYP4F35P gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CYP4F35P gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CYP4F35P gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.