| HGNC Family | Pseudoautosomal regions |
| Name | DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nZFAT is an evolutionarily conserved nuclear protein that contains an AT-hook domain and 18 C2H2 zinc fingers, and it functions primarily as a transcriptional regulator in immune cells. It is predominantly expressed in immune-related tissues such as the thymus, spleen, and lymph nodes, where it plays a key role in promoting proper T‐ and B-cell development and survival. In T lymphocytes, ZFAT modulates the expression of critical genes involved in positive selection and T cell receptor (TCR) signaling, preventing inappropriate apoptosis and ensuring cellular homeostasis. This regulation occurs via direct binding to promoter regions and modulation of signaling cascades that govern activation and differentiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nZFAT is also indispensable for hematopoietic development. During early embryogenesis in the mouse yolk sac, it is essential for the differentiation of hematopoietic progenitors by directly regulating key transcription factors such as Tal1, Lmo2, and Gata1. In addition, experiments in both mouse embryonic fibroblasts and lymphoblastic leukemia cells have demonstrated that reduced ZFAT levels lead to apoptosis, in part due to down-regulation of anti-apoptotic molecules like BCL-2 and components of the IL6st-mediated signaling pathway. These observations delineate critical roles for ZFAT in promoting cell survival during primitive hematopoiesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in immune regulation and hematopoiesis, ZFAT contributes to chromatin dynamics and centromeric function. It binds a specific, conserved 8-bp consensus sequence that is widely distributed in centromere regions and, through recruitment of histone acetyltransferase KAT2B and bromodomain protein BRD4, enhances H4K8 acetylation to facilitate the transcription of centromeric noncoding RNAs. The mechanism by which ZFAT locates to centromeres involves an interaction with the centromeric protein CENP-B. In parallel, in peripheral T cells, ZFAT influences FoxO1 stability by modulating autophagic and Akt-related signaling pathways, thereby ensuring proper cellular localization and function of key transcriptional regulators. These multifaceted activities underscore the pivotal role of ZFAT in maintaining both genomic integrity and cell fate decisions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Midori Koyanagi, Kazuhiko Nakabayashi, Takahiro Fujimoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZFAT expression in B and T lymphocytes and identification of ZFAT-regulated genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2008.01.009"}], "href": "https://doi.org/10.1016/j.ygeno.2008.01.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18329245"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18329245"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Masahiro Ogawa, Tadashi Okamura, Shuhei Ishikura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zfat-deficiency results in a loss of CD3ζ phosphorylation with dysregulation of ERK and Egr activities leading to impaired positive selection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0076254"}], "href": "https://doi.org/10.1371/journal.pone.0076254"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24098453"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24098453"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shuhei Ishikura, Masahiro Ogawa, Keiko Doi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zfat-deficient CD4⁺ CD8⁺ double-positive thymocytes are susceptible to apoptosis with deregulated activation of p38 and JNK."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.24954"}], "href": "https://doi.org/10.1002/jcb.24954"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25169027"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25169027"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yuri Iwaihara, Shuhei Ishikura, Keiko Doi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Marked Reduction in FoxO1 Protein by its Enhanced Proteasomal Degradation in Zfat-deficient Peripheral T-Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anticancer Res (2015)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26168481"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26168481"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Shuhei Ishikura, Toshiyuki Tsunoda, Kazuhiko Nakabayashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular mechanisms of transcriptional regulation by the nuclear zinc-finger protein Zfat in T cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbagrm.2016.08.010"}], "href": "https://doi.org/10.1016/j.bbagrm.2016.08.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27591365"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27591365"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Toshiyuki Tsunoda, Yasuo Takashima, Yoko Tanaka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Immune-related zinc finger gene ZFAT is an essential transcriptional regulator for hematopoietic differentiation in blood islands."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1002494107"}], "href": "https://doi.org/10.1073/pnas.1002494107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20660741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20660741"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Keiko Doi, Takahiro Fujimoto, Midori Koyanagi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZFAT is a critical molecule for cell survival in mouse embryonic fibroblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Mol Biol Lett (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2478/s11658-010-0041-1"}], "href": "https://doi.org/10.2478/s11658-010-0041-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21225468"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21225468"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Keiko Doi, Toshiyuki Tsunoda, Midori Koyanagi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zfat Is Indispensable for the Development of Erythroid Cells in the Fetal Liver."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anticancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21873/anticanres.13625"}], "href": "https://doi.org/10.21873/anticanres.13625"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31366551"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31366551"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Shuhei Ishikura, Yuri Iwaihara, Yoko Tanaka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Nuclear Zinc Finger Protein Zfat Maintains FoxO1 Protein Levels in Peripheral T Cells by Regulating the Activities of Autophagy and the Akt Signaling Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M116.723734"}], "href": "https://doi.org/10.1074/jbc.M116.723734"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27226588"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27226588"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Shuhei Ishikura, Kazuhiko Nakabayashi, Masayoshi Nagai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZFAT binds to centromeres to control noncoding RNA transcription through the KAT2B-H4K8ac-BRD4 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkaa815"}], "href": "https://doi.org/10.1093/nar/gkaa815"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32997115"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32997115"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Shuhei Ishikura, Kazumasa Yoshida, Sayuri Hashimoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CENP-B promotes the centromeric localization of ZFAT to control transcription of noncoding RNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jbc.2021.101213"}], "href": "https://doi.org/10.1016/j.jbc.2021.101213"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34547289"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34547289"}]}]}]}
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| NCBI Gene ID | 727856 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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DDX11L16 has 5 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.
Click the + buttons to view associations for DDX11L16 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of DDX11L16 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |