| Name | family with sequence similarity 25, member C |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FAM25C, a member of the FAM25 gene family, has recently been identified as a promising salivary extracellular RNA biomarker for gingival inflammation. In studies focused on non‐invasive diagnostics for periodontal disease, FAM25C was included (along with markers such as SPRR1A, lnc‐TET3-2:1, and CRCT1) in a panel that demonstrated robust performance for gingivitis detection and monitoring, with an area under the curve of 0.91, 71% sensitivity, and 100% specificity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although its diagnostic utility is evident through consistent expression changes correlating with disease regression, the underlying biological function of FAM25C remains poorly defined. In contrast to other investigations that elucidate mechanistic pathways in contexts such as cancer spheroid formation and drug‐induced toxicity"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "9"}]}, {"type": "t", "text": ", the current evidence suggests that FAM25C primarily serves as a biomarker rather than an active effector in disease pathogenesis. Further studies are warranted to determine whether FAM25C plays additional roles in cellular processes or might participate in regulatory networks that contribute to the pathophysiology of periodontal disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Karolina E Kaczor-Urbanowicz, Harsh M Trivedi, Patricia O Lima, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Salivary exRNA biomarkers to detect gingivitis and monitor disease regression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Periodontol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcpe.12930"}], "href": "https://doi.org/10.1111/jcpe.12930"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29779262"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29779262"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Erin Faulkner, Adelaide Mensah, Aoife M Rodgers, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Role of Epigenetic and Biological Biomarkers in the Diagnosis of Periodontal Disease: A Systematic Review Approach."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diagnostics (Basel) (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/diagnostics12040919"}], "href": "https://doi.org/10.3390/diagnostics12040919"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35453967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35453967"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "S Condello, C A Morgan, S Nagdas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "β-Catenin-regulated ALDH1A1 is a target in ovarian cancer spheroids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2014.178"}], "href": "https://doi.org/10.1038/onc.2014.178"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24954508"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24954508"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiaoqin He, Yongfa Zheng, Yuefeng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA AK058003, as a precursor of miR-15a, interacts with HuR to inhibit the expression of γ-synuclein in hepatocellular carcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.14276"}], "href": "https://doi.org/10.18632/oncotarget.14276"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28035067"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28035067"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Rong Qiu, Chao Chen, Hong Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Large genomic region free of GWAS-based common variants contains fertility-related genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0061917"}], "href": "https://doi.org/10.1371/journal.pone.0061917"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23613972"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23613972"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Martin Otava, Ziv Shkedy, Willem Talloen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of in vitro and in vivo disconnects using transcriptomic data."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-015-1726-7"}], "href": "https://doi.org/10.1186/s12864-015-1726-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26282683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26282683"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Mandana Arbab, Sharanya Srinivasan, Tatsunori Hashimoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cloning-free CRISPR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cell Reports (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stemcr.2015.09.022"}], "href": "https://doi.org/10.1016/j.stemcr.2015.09.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26527385"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26527385"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Felicita F Jusof, Supun M Bakmiwewa, Silvia Weiser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Investigation of the Tissue Distribution and Physiological Roles of Indoleamine 2,3-Dioxygenase-2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Tryptophan Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1178646917735098"}], "href": "https://doi.org/10.1177/1178646917735098"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29051706"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29051706"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Tiantian Zhang, Zhuqiang Zhang, Qiang Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H3K27 acetylation is dispensable for enhancer activity in mouse embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13059-020-01957-w"}], "href": "https://doi.org/10.1186/s13059-020-01957-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32085783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32085783"}]}]}]}
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| Synonyms | BA164N7.4 |
| Proteins | FM25C_HUMAN |
| NCBI Gene ID | 644054 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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FAM25C has 382 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.
Click the + buttons to view associations for FAM25C from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of FAM25C gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of FAM25C gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM25C gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of FAM25C gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of FAM25C gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of FAM25C gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with FAM25C gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with FAM25C gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at FAM25C gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of FAM25C gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of FAM25C gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing FAM25C from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of FAM25C gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of FAM25C gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of FAM25C gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of FAM25C gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of FAM25C gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of FAM25C gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of FAM25C protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of FAM25C gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of FAM25C gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of FAM25C gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |