| Name | GIMAP1-GIMAP5 readthrough |
| Description | This locus represents naturally occurring readthrough transcription between the neighboring GIMAP1 (GTPase, IMAP family member 1) and GIMAP5 (GTPase, IMAP family member 5) genes on chromosome 7. Alternative splicing results in multiple readthrough transcript variants, one of which encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Jan 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Members of the GIMAP family (GTPases of immunity‐associated proteins) are preferentially expressed by cells of the hematopoietic system and serve as critical regulators of lymphocyte survival, differentiation, and function. For example, studies on GIMAP1 indicate that it is indispensable for the survival of peripheral B cells and may also contribute to skeletal muscle cell viability affecting appendicular lean mass variation, suggesting broader roles in tissue cell survival (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, work on GIMAP3 demonstrates that it cooperates with other family members – notably GIMAP5 – to support T‐cell homeostasis, as combined deficiencies exacerbate the reduction in T‐cell numbers (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Among the family members, GIMAP5 has been most extensively characterized. It is essential for the full intrathymic maturation and peripheral survival of both CD4⁺ and CD8⁺ T lymphocytes, as well as for natural killer and NKT‐cell development. GIMAP5 functions in a hematopoietic cell–intrinsic manner by facilitating noncanonical antigen–receptor signals and regulating intracellular pathways, including optimal T-cell receptor and interleukin-7 receptor signaling. In several studies, GIMAP5 has been shown to modulate intracellular Ca²⁺ homeostasis by promoting mitochondrial buffering of Ca²⁺, a function that is critical for sustained Ca²⁺ entry and cellular survival (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Altered GIMAP5 expression or function—arising from mutations, frameshifts, or polymorphisms that affect mRNA processing—is associated with impaired lymphocyte survival and dysregulated immune responses. Such alterations correlate with increased susceptibility to autoimmune conditions including type 1 diabetes and systemic lupus erythematosus, likely due to disruptions in regulatory T-cell populations and aberrant cytokine responses (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "13"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, GIMAP5 has been implicated in the maintenance of hematopoietic stem cell quiescence and progenitor cell survival through its influence on anti‐apoptotic factors and mitochondrial integrity (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": " In addition, its role in modulating key intracellular signaling cascades—such as facilitating the inactivation of GSK3β to promote c-Myc induction and NFAT nuclear import—further underscores its importance in T-cell activation (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, studies have also linked GIMAP5 dysfunction to non–lymphoid abnormalities, including liver pathology characterized by altered hepatic endothelial cell identity and portal hypertension (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, current evidence indicates that GIMAP1, GIMAP3, and particularly GIMAP5 are integral to the survival and function of lymphocytes, with their coordinated activity ensuring proper immune homeostasis. Disruptions in their function contribute to defective immune regulation and autoimmunity, emphasizing their potential as targets for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Louise M C Webb, Preeta Datta, Sarah E Bell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GIMAP1 Is Essential for the Survival of Naive and Activated B Cells In Vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1501582"}], "href": "https://doi.org/10.4049/jimmunol.1501582"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26621859"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26621859"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shu Ran, Yong-Jun Liu, Lei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study identified copy number variants important for appendicular lean mass."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0089776"}], "href": "https://doi.org/10.1371/journal.pone.0089776"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24626161"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24626161"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kouta Yano, Christine Carter, Naofumi Yoshida, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gimap3 and Gimap5 cooperate to maintain T-cell numbers in the mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Immunol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/eji.201343750"}], "href": "https://doi.org/10.1002/eji.201343750"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24510501"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24510501"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Michael J Barnes, Halil Aksoylar, Philippe Krebs, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of T cell and B cell quiescence precedes the onset of microbial flora-dependent wasting disease and intestinal inflammation in Gimap5-deficient mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.0903164"}], "href": "https://doi.org/10.4049/jimmunol.0903164"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20190135"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20190135"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ryan D Schulteis, Haiyan Chu, Xuezhi Dai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impaired survival of peripheral T cells, disrupted NK/NKT cell development, and liver failure in mice lacking Gimap5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2008-03-146555"}], "href": "https://doi.org/10.1182/blood-2008-03-146555"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18796632"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18796632"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xi Lin Chen, Daniel Serrano, Marian Mayhue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GTPase of the immune-associated nucleotide-binding protein 5 (GIMAP5) regulates calcium influx in T-lymphocytes by promoting mitochondrial calcium accumulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BJ20120516"}], "href": "https://doi.org/10.1042/BJ20120516"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23098229"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23098229"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xi-Lin Chen, Daniel Serrano, Farnaz Ghobadi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "IA-2 autoantibodies in incident type I diabetes patients are associated with a polyadenylation signal polymorphism in GIMAP5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Immun (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.gene.6364413"}], "href": "https://doi.org/10.1038/sj.gene.6364413"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17641683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17641683"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "H Ibrahim Aksoylar, Kristin Lampe, Michael J Barnes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of immunological tolerance in Gimap5-deficient mice is associated with loss of Foxo in CD4+ T cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1101206"}], "href": "https://doi.org/10.4049/jimmunol.1101206"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22106000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22106000"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "M K Lim, D H Sheen, S A Kim, et al. 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| NCBI Gene ID | 100527949 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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GIMAP1-GIMAP5 has 1,127 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 34 datasets.
Click the + buttons to view associations for GIMAP1-GIMAP5 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of GIMAP1-GIMAP5 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of GIMAP1-GIMAP5 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of GIMAP1-GIMAP5 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of GIMAP1-GIMAP5 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing GIMAP1-GIMAP5 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with GIMAP1-GIMAP5 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of GIMAP1-GIMAP5 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with GIMAP1-GIMAP5 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at GIMAP1-GIMAP5 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of GIMAP1-GIMAP5 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of GIMAP1-GIMAP5 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of GIMAP1-GIMAP5 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of GIMAP1-GIMAP5 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of GIMAP1-GIMAP5 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of GIMAP1-GIMAP5 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with GIMAP1-GIMAP5 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with GIMAP1-GIMAP5 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with GIMAP1-GIMAP5 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of GIMAP1-GIMAP5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of GIMAP1-GIMAP5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Kinase Library Tyrosine Kinome Atlas | kinases that phosphorylate GIMAP1-GIMAP5 protein from the Kinase Library Tyrosine Kinome Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of GIMAP1-GIMAP5 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of GIMAP1-GIMAP5 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by GIMAP1-GIMAP5 gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of GIMAP1-GIMAP5 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at GIMAP1-GIMAP5 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of GIMAP1-GIMAP5 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of GIMAP1-GIMAP5 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of GIMAP1-GIMAP5 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of GIMAP1-GIMAP5 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of GIMAP1-GIMAP5 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of GIMAP1-GIMAP5 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with GIMAP1-GIMAP5 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2014 | pathways involving GIMAP1-GIMAP5 protein from the Wikipathways Pathways 2014 dataset. | |