GPR42 Gene

HGNC Family G protein-coupled receptors
Name G protein-coupled receptor 42 (gene/pseudogene)
Description Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GPR42 is a G protein‐coupled receptor that belongs to a cluster of receptors related to free fatty acid receptor 3 (FFAR3/GPR41). Initially identified as a duplication of GPR41 and even considered a potential pseudogene due to its high sequence similarity (≈98%) with GPR41, subsequent studies have challenged this notion. In fact, several investigations have demonstrated that polymorphisms—including key substitutions such as the variant at amino acid 174—result in a significant proportion of GPR42 alleles encoding functionally active receptors. Moreover, the presence of diverse haplotypes, copy number variations, and processed transcripts in human tissues indicate that GPR42 can be expressed and may exhibit pharmacologically distinct profiles compared with its closely related counterpart. Together, these findings suggest that GPR42, rather than being an inactive pseudogene, may contribute to fatty acid signaling in humans and should be considered a functional receptor with potential implications for metabolic regulation and therapeutic targeting."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chen W Liaw, Daniel T Connolly "}, {"type": "b", "children": [{"type": "t", "text": "Sequence polymorphisms provide a common consensus sequence for GPR41 and GPR42."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Cell Biol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/dna.2009.0916"}], "href": "https://doi.org/10.1089/dna.2009.0916"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19630535"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19630535"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Henry L Puhl, Yu-Jin Won, Van B Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human GPR42 is a transcribed multisite variant that exhibits copy number polymorphism and is functional when heterologously expressed."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep12880"}], "href": "https://doi.org/10.1038/srep12880"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26260360"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26260360"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Andrew J Brown, Susan M Goldsworthy, Ashley A Barnes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Orphan G protein-coupled receptors GPR41 and GPR43 are activated by propionate and other short chain carboxylic acids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M211609200"}], "href": "https://doi.org/10.1074/jbc.M211609200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12496283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12496283"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "M Sawzdargo, S R George, T Nguyen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A cluster of four novel human G protein-coupled receptor genes occurring in close proximity to CD22 gene on chromosome 19q13.1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (1997)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/bbrc.1997.7513"}], "href": "https://doi.org/10.1006/bbrc.1997.7513"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "9344866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/9344866"}]}]}]}
Synonyms GPR42P, FFAR1L, GPR41L, FFAR3L
Proteins GPR42_HUMAN
NCBI Gene ID 2866
API
Download Associations
Predicted Functions View GPR42's ARCHS4 Predicted Functions.
Co-expressed Genes View GPR42's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GPR42's ARCHS4 Predicted Functions.

Functional Associations

GPR42 has 622 functional associations with biological entities spanning 7 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 29 datasets.

Click the + buttons to view associations for GPR42 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GPR42 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of GPR42 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of GPR42 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GPR42 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GPR42 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with GPR42 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with GPR42 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with GPR42 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with GPR42 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with GPR42 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with GPR42 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing GPR42 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of GPR42 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of GPR42 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GO Molecular Function Annotations 2025 molecular functions performed by GPR42 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of GPR42 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of GPR42 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of GPR42 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of GPR42 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GPR42 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GPR42 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
LOCATE Curated Protein Localization Annotations cellular components containing GPR42 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain GPR42 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by GPR42 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GPR42 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GPR42 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GPR42 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GPR42 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving GPR42 protein from the WikiPathways Pathways 2024 dataset.