LINC00176 Gene

Name long intergenic non-protein coding RNA 176
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00176 is a long intergenic noncoding RNA whose aberrant expression has been implicated in several human cancers. In hepatocellular carcinoma, LINC00176 is highly expressed and contributes to tumor cell proliferation and survival by acting as a molecular sponge for tumor‐suppressive microRNAs (miR‑9 and miR‑185), thereby regulating the expression of over 200 downstream genes. Its transcription is driven by oncogenic factors including Myc, Max, and AP‑4, which also upregulate the sequestered miRNAs, forming a tightly controlled regulatory network that supports hepatocellular carcinoma progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In ovarian cancer, LINC00176 is also upregulated and predominantly localized in the nucleus. Functional studies indicate that it promotes tumorigenesis by recruiting the transcription factor BCL3 to enhance the expression of ceruloplasmin (CP). This upregulation of CP is associated with increased cell proliferation, migration, and invasion, as well as reduced apoptosis, suggesting that the LINC00176/BCL3/CP axis plays a critical oncogenic role in the development and progression of ovarian cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, evidence from transcriptomic profiling in esophageal cancer has identified LINC00176 as a component of an eight‐lncRNA prognostic signature. Dysregulation of LINC00176 within this signature is linked to alterations in metabolic processes such as glucose and lipid metabolism, thereby contributing to disease progression and offering potential prognostic value in this malignancy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies underscore the multifaceted oncogenic functions of LINC00176 across distinct cancer types by modulating gene expression through microRNA sponging and transcriptional regulation. Its role in promoting cellular proliferation, migration, and survival makes LINC00176 a promising target for therapeutic intervention and a potential biomarker for cancer prognosis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "D D H Tran, C Kessler, S E Niehus, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Myc target gene, long intergenic noncoding RNA, Linc00176 in hepatocellular carcinoma regulates cell cycle and cell survival by titrating tumor suppressor microRNAs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2017.312"}], "href": "https://doi.org/10.1038/onc.2017.312"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28869604"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28869604"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lan Dai, Jixiang Niu, Yanli Feng "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of long non-coding RNA LINC00176 suppresses ovarian cancer progression by BCL3-mediated down-regulation of ceruloplasmin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.14701"}], "href": "https://doi.org/10.1111/jcmm.14701"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31668012"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31668012"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qiaowei Fan, Bingrong Liu "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/msm.902615"}], "href": "https://doi.org/10.12659/msm.902615"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28028307"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28028307"}]}]}]}
Synonyms C20orf204, NCRNA00176, PRR17
Proteins PRR17_HUMAN
NCBI Gene ID 284739
API
Download Associations
Predicted Functions View LINC00176's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00176's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00176's ARCHS4 Predicted Functions.

Functional Associations

LINC00176 has 1,677 functional associations with biological entities spanning 5 categories (molecular profile, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.

Click the + buttons to view associations for LINC00176 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00176 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00176 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00176 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00176 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00176 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00176 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00176 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with LINC00176 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with LINC00176 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
CTD Gene-Disease Associations diseases associated with LINC00176 gene/protein from the curated CTD Gene-Disease Associations dataset.
DisGeNET Gene-Disease Associations diseases associated with LINC00176 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with LINC00176 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00176 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00176 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00176 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00176 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00176 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00176 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00176 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00176 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00176 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00176 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00176 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00176 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of LINC00176 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00176 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00176 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with LINC00176 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00176 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.