LINC00371 Gene

Name long intergenic non-protein coding RNA 371
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the four abstracts directly address LINC00371, the collective findings from these studies underscore the diverse roles that long non‐coding RNAs (lncRNAs) can play in regulating key biological processes such as fertility, embryonic development, and post‐surgical outcomes.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In one study of Nordic Red cattle (1), structural variants—including large deletions that eliminate protein‐coding genes like RNASEH2B—were shown to have profound effects on embryonic viability and fertility despite conferring favorable traits (increased milk yield). This work highlights how genetic alterations can simultaneously exert detrimental effects on reproduction while being maintained in the population due to balancing selection. In parallel, research on the human cumulus–oocyte complex (2) identified several lncRNAs that are highly abundant in MII oocytes and cumulus cells. The inferred functions of these lncRNAs include roles in chromatin remodeling, cell pluripotency, and early embryonic development, which are critical for oocyte quality and developmental competence. Furthermore, a genome‐wide association study in cardiac surgery patients (3) demonstrated that genetic variants in various loci can correlate with postoperative complications, emphasizing the multifactorial nature of genetic influences on health outcomes.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although LINC00371 was not specifically mentioned in any of these abstracts, the broader context provided by these studies suggests that, like other lncRNAs, LINC00371 may be involved in modulating gene regulatory networks that impact reproductive success and developmental processes. Continued research and functional analyses will be vital to determine whether LINC00371 contributes similarly to the regulation of embryonic development or related physiological pathways.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, while direct evidence for the function of LINC00371 remains to be elucidated, these studies collectively demonstrate that both coding genes and lncRNAs are important in maintaining a balance between beneficial and detrimental phenotypic traits in diverse biological contexts (1,2,3,4).\n "}]}, {"type": "t", "text": "\n <ul>\n <li>"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "</li>\n <li>"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "</li>\n <li>"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "</li>\n <li>"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "</li>\n </ul>"}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Naveen Kumar Kadri, Goutam Sahana, Carole Charlier, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red cattle: additional evidence for the common occurrence of balancing selection in livestock."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1004049"}], "href": "https://doi.org/10.1371/journal.pgen.1004049"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24391517"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24391517"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Julien Bouckenheimer, Patricia Fauque, Charles-Henri Lecellier, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential long non-coding RNA expression profiles in human oocytes and cumulus cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-20727-0"}], "href": "https://doi.org/10.1038/s41598-018-20727-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29396444"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29396444"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Sabine Westphal, Christian Stoppe, Matthias Gruenewald, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cardiovasc Disord (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12872-019-1002-x"}], "href": "https://doi.org/10.1186/s12872-019-1002-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30678657"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30678657"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Rashmi Kanagal-Shamanna, Haiyan Bao, Hutton Kearney, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular characterization of Novel "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "ATM"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " fusions in chronic lymphocytic leukemia and T-cell prolymphocytic leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leuk Lymphoma (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/10428194.2021.2010061"}], "href": "https://doi.org/10.1080/10428194.2021.2010061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34898335"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34898335"}]}]}]}
Synonyms C13orf42, LINC00372
NCBI Gene ID 647166
API
Download Associations
Predicted Functions View LINC00371's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00371's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00371's ARCHS4 Predicted Functions.

Functional Associations

LINC00371 has 252 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00371 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00371 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00371 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00371 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00371 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00371 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00371 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00371 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00371 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00371 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of LINC00371 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.