LINC00634 Gene

Name long intergenic non-protein coding RNA 634
Description Involved in neuron maturation. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00634 appears to act as an oncogenic long noncoding RNA in multiple cancer contexts. In esophageal cancer, LINC00634 is significantly upregulated in tumor tissues compared with non‐tumor tissues, and its high expression is associated with advanced tumor–node–metastasis stage. Functional studies in esophageal cancer cell lines demonstrated that silencing LINC00634 reduces cell viability and promotes apoptosis via a mechanism involving the miR‑342‑3p/Bcl2L1 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In glioblastoma, LINC00634 was identified as one of seven epithelial‐to‐mesenchymal transition (EMT)–related lncRNAs that together form a prognostic signature. Although the precise mechanistic role of LINC00634 in glioblastoma remains to be fully elucidated, its inclusion in this signature suggests that it is associated with EMT and metastasis‐related pathways as well as with altered immune cell infiltration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Notably, while studies in the psychiatric domain"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "provided broader insights into transcriptomic and epigenetic dysregulation in neuropsychiatric disorders, they did not specifically address the function of LINC00634. Overall, current evidence suggests that LINC00634 may promote tumor progression by enhancing cell survival and facilitating processes related to EMT, making it a potential target for therapeutic intervention in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiaohong Zhang, Yinman Feng, Yanli Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA LINC00634 Functions as an Oncogene in Esophageal Squamous Cell Carcinoma Through the miR-342-3p/Bcl2L1 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Technol Cancer Res Treat (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1533033820928508"}], "href": "https://doi.org/10.1177/1533033820928508"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32583748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32583748"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "XinJie Yang, Sha Niu, JiaQiang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an epithelial-mesenchymal transition-related lncRNA prognostic signature for patients with glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-03213-y"}], "href": "https://doi.org/10.1038/s41598-021-03213-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34880375"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34880375"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michael J Gandal, Pan Zhang, Evi Hadjimichael, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.aat8127"}], "href": "https://doi.org/10.1126/science.aat8127"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30545856"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30545856"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Prashanth Rajarajan, Schahram Akbarian "}, {"type": "b", "children": [{"type": "t", "text": "Use of the epigenetic toolboxto contextualize common variants associated with schizophrenia risk."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dialogues Clin Neurosci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.31887/DCNS.2019.21.4/sakbarian"}], "href": "https://doi.org/10.31887/DCNS.2019.21.4/sakbarian"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31949408"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31949408"}]}]}]}
Synonyms BK250D10.8
NCBI Gene ID 339674
API
Download Associations
Predicted Functions View LINC00634's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00634's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00634's ARCHS4 Predicted Functions.

Functional Associations

LINC00634 has 908 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for LINC00634 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00634 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00634 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00634 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00634 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00634 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00634 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00634 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00634 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00634 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00634 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00634 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00634 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00634 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00634 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of LINC00634 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00634 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00634 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.