| Name | long intergenic non-protein coding RNA 890 |
| Description | Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long intergenic noncoding RNA LINC00890 has emerged as a transcript of interest in studies of musculoskeletal and uterine pathologies. In a genome‐wide association and transcriptomic meta‐analysis addressing rotator cuff disease, a locus encompassing LINC00890 alongside ALG13 was identified as being associated with an increased genetic risk for tendon injury. Although the mechanistic details remain to be fully elucidated, this genetic association suggests that LINC00890 may participate in regulatory pathways that influence tendon structural integrity or repair mechanisms following injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, comprehensive RNA sequencing analyses in leiomyomas have confirmed differential expression of LINC00890 when comparing fibroid tissue with matched myometrium. This observation implicates LINC00890 as a potential regulator within the complex network of noncoding RNAs, microRNAs, and mRNAs that underlie the pathogenesis of uterine fibroids, although its precise functional role requires further investigation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n It should be noted that, while another study on pelvic organ prolapse provided insights into altered gene expression profiles associated with extracellular matrix remodeling"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", LINC00890 was not specifically discussed in that context. Nonetheless, the differential expression and genetic association of LINC00890 in both rotator cuff disease and leiomyomas collectively support the concept that this lncRNA may have regulatory functions in tissue-specific disease processes.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stuart K Kim, Condor Nguyen, Kevin B Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A genome-wide association study for shoulder impingement and rotator cuff disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Shoulder Elbow Surg (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jse.2020.11.025"}], "href": "https://doi.org/10.1016/j.jse.2020.11.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33482370"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33482370"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tsai-Der Chuang, Omid Khorram "}, {"type": "b", "children": [{"type": "t", "text": "Expression Profiling of lncRNAs, miRNAs, and mRNAs and Their Differential Expression in Leiomyoma Using Next-Generation RNA Sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1933719117711265"}], "href": "https://doi.org/10.1177/1933719117711265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28587571"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28587571"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ruoyun Xie, Ying Xu, Shuixiu Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Differentially Expressed Genes in Pelvic Organ Prolapse by RNA-Seq."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/msm.900224"}], "href": "https://doi.org/10.12659/msm.900224"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27818488"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27818488"}]}]}]}
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| Synonyms | DKFZP686D0853, SERTM2 |
| NCBI Gene ID | 401613 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00890 has 497 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.
Click the + buttons to view associations for LINC00890 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00890 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00890 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00890 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00890 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with LINC00890 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00890 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00890 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00890 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing LINC00890 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00890 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00890 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00890 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00890 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00890 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00890 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of LINC00890 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00890 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |