LINC00998 Gene

Name long intergenic non-protein coding RNA 998
Description Involved in negative regulation of type I interferon-mediated signaling pathway. Located in endoplasmic reticulum membrane and mitochondrial membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00998 has been implicated in cancer through distinct, context‐dependent mechanisms. In hepatocellular carcinoma, LINC00998 encodes a small endogenous peptide named SMIM30. Rather than acting as a non‐coding RNA per se, SMIM30 promotes tumorigenesis by enhancing cell proliferation and migration. Mechanistically, SMIM30 is transcriptionally activated by c‐Myc and facilitates the membrane anchoring and phosphorylation of the non‐receptor tyrosine kinases SRC/YES1, which in turn activate the downstream MAPK signaling cascade."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, studies in glioma and acute myeloid leukemia reveal a tumor‐suppressive role for LINC00998. In glioma, LINC00998 is downregulated, and its overexpression impairs cell proliferation and arrests the cell cycle at the G1/S transition. It exerts these effects through binding to CBX3, thereby stabilizing this protein against ubiquitination and regulating the c‐Met/Akt/mTOR pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, in acute myeloid leukemia, reduced levels of LINC00998 are associated with relapse and poor prognosis. Overexpression of LINC00998 in AML cells diminishes viability and colony formation while promoting apoptosis; these effects are mediated via its interaction with ZFP36, which enhances the decay of mTORC2, a proto‐oncogene in this setting."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yanan Pang, Zhiyong Liu, Huan Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Peptide SMIM30 promotes HCC development by inducing SRC/YES1 membrane anchoring and MAPK pathway activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Hepatol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jhep.2020.05.028"}], "href": "https://doi.org/10.1016/j.jhep.2020.05.028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32461121"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32461121"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Haiping Cai, Yanjiao Yu, Xiangrong Ni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00998 inhibits the malignant glioma phenotype via the CBX3-mediated c-Met/Akt/mTOR axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-020-03247-6"}], "href": "https://doi.org/10.1038/s41419-020-03247-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33268783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33268783"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ximin Fang, Xiazhen Pan, Huirong Mai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00998 functions as a novel tumor suppressor in acute myeloid leukemia via regulating the ZFP36 ring finger protein/mammalian target of rapamycin complex 2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1996506"}], "href": "https://doi.org/10.1080/21655979.2021.1996506"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34699314"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34699314"}]}]}]}
Synonyms SMIM30
Proteins YG055_HUMAN
NCBI Gene ID 401397
API
Download Associations
Predicted Functions View LINC00998's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00998's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00998's ARCHS4 Predicted Functions.

Functional Associations

LINC00998 has 545 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for LINC00998 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00998 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00998 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00998 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00998 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of LINC00998 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
DisGeNET Gene-Disease Associations diseases associated with LINC00998 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00998 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00998 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
HPA Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00998 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of LINC00998 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00998 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00998 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00998 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00998 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of LINC00998 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PFOCR Pathway Figure Associations 2023 pathways involving LINC00998 protein from the PFOCR Pathway Figure Associations 2023 dataset.