| HGNC Family | ATPases, Mitochondrial respiratory chain complexes |
| Name | ATP synthase F0 subunit 6 |
| Description | Contributes to proton-transporting ATP synthase activity, rotational mechanism. Involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion. Part of proton-transporting ATP synthase complex. Implicated in Leber hereditary optic neuropathy; NARP syndrome; Parkinson's disease; multiple sclerosis; and systemic lupus erythematosus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMT‐ATP6 encodes the highly hydrophobic subunit 6 of the mitochondrial F₀F₁‐ATP synthase complex—an essential component of the oxidative phosphorylation machinery responsible for proton translocation and ATP synthesis. Multiple studies demonstrate that mutations in MT‐ATP6 disrupt the precise assembly and stability of ATP synthase, leading to markedly reduced ATP production, coupling defects and—in some cases—enhanced production of reactive oxygen species. Experimental models employing allotopic expression approaches have underscored that proper mitochondrial import and integration of the ATP6 protein is crucial for restoring energy production despite disease‐associated nucleotide changes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA wide spectrum of mitochondrial disorders has been attributed to mutations or polymorphisms in MT‐ATP6. Variations may affect not only the enzymatic efficiency of ATP synthesis but also the processing and stability of its bicistronic mRNA transcripts. Clinical heterogeneity is evident—in conditions ranging from Leigh syndrome and neuropathy‐ataxia syndromes to Leber hereditary optic neuropathy, ataxia, and even subtle abnormalities impacting metabolic status or reproductive function—indicating that both mutation load (heteroplasmy) and the specific amino acid changes have significant phenotypic consequences. In addition, certain MT‐ATP6 variants have been linked to susceptibility differences in common metabolic diseases and even in fertilization success."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "36"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, emerging evidence links alterations in MT‐ATP6 not only to bioenergetic deficiencies but also to changes in mitochondrial morphology, the regulation of ATP synthase oligomerization, and the activation of pro‐apoptotic pathways. These effects may influence cell fate decisions, contributing to neurodegeneration and even cancer cell escape from apoptosis. Such findings support the concept that even subtle perturbations in the function or expression of ATPase6 can have widespread downstream effects on cellular metabolism, stress responses, and overall mitochondrial homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "37"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Giovanni Manfredi, Jin Fu, Joseline Ojaimi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "mRNA localization to the mitochondrial surface allows the efficient translocation inside the organelle of a nuclear recoded ATP6 protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.18206"}], "href": "https://doi.org/10.1261/rna.18206"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16751614"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16751614"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Paulina Cortés-Hernández, Martha E Vázquez-Memije, José J García "}, {"type": "b", "children": [{"type": "t", "text": "ATP6 homoplasmic mutations inhibit and destabilize the human F1F0-ATP synthase without preventing enzyme assembly and oligomerization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M606828200"}], "href": "https://doi.org/10.1074/jbc.M606828200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17121862"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17121862"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Alessandra Baracca, Gianluca Sgarbi, Marina Mattiazzi, et al. 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| Synonyms | ATP6, ATPASE6, MTATP6 |
| Proteins | ATP6_HUMAN |
| NCBI Gene ID | 4508 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MT-ATP6 has 930 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.
Click the + buttons to view associations for MT-ATP6 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MT-ATP6 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MT-ATP6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CORUM Protein Complexes | protein complexs containing MT-ATP6 protein from the CORUM Protein Complexes dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with MT-ATP6 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with MT-ATP6 gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of MT-ATP6 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with MT-ATP6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with MT-ATP6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing MT-ATP6 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with MT-ATP6 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MT-ATP6 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of MT-ATP6 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MT-ATP6 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of MT-ATP6 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of MT-ATP6 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving MT-ATP6 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing MT-ATP6 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by MT-ATP6 gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with MT-ATP6 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for MT-ATP6 protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| KEGG Pathways | pathways involving MT-ATP6 protein from the KEGG Pathways dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of MT-ATP6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting MT-ATP6 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving MT-ATP6 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| ProteomicsDB Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of MT-ATP6 protein relative to other cell types and tissues from the ProteomicsDB Cell Type and Tissue Protein Expression Profiles dataset. | |
| Sanger Dependency Map Cancer Cell Line Proteomics | cell lines associated with MT-ATP6 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset. | |
| WikiPathways Pathways 2014 | pathways involving MT-ATP6 protein from the Wikipathways Pathways 2014 dataset. | |