| Name | nocturnin |
| Description | The protein encoded by this gene is highly similar to Nocturnin, a gene identified as a circadian clock regulated gene in Xenopus laevis. This protein and Nocturnin protein share similarity with the C-terminal domain of a yeast transcription factor, carbon catabolite repression 4 (CCR4). The mRNA abundance of a similar gene in mouse has been shown to exhibit circadian rhythmicity, which suggests a role for this protein in clock function or as a circadian clock effector. [provided by RefSeq, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNocturnin (NOCT) is a circadian clock–controlled gene whose transcription oscillates in a robust and time‐dependent manner. In human cells, the nocturnin promoter is activated by the CLOCK/BMAL1 heterodimer via E‐box elements, thereby linking the core circadian machinery to the regulation of downstream cellular processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGenetic studies have further implicated NOCT (also known as CCRN4L) in metabolic homeostasis and cancer risk. Variations in the NOCT gene have been associated with differences in body mass index and predisposition to non–small cell lung cancer, indicating that NOCT may serve as a critical nexus between nutrient absorption, metabolic regulation, and circadian timing."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, NOCT functions as an exoribonuclease with similarities to the CCR4-class deadenylases. Structural studies of its catalytic domain reveal that NOCT conserves key catalytic residues reminiscent of other exoribonucleases, yet its surface properties and an unusually narrow active site pocket differentiate it from its classical deadenylase counterparts. Although NOCT can reduce the abundance and translation of target mRNAs in cells, purified recombinant NOCT shows little in vitro ribonuclease activity, suggesting that additional factors or regulatory modifications may be required for its full enzymatic function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in mRNA turnover, NOCT exhibits cell type–specific expression and differential subcellular localization—including cytoplasmic and mitochondrial distributions—that enable it to influence a variety of physiological processes. Its actions affect not only the stability of mRNAs related to metabolic enzymes but also modulate intracellular NAD(H) and NADP(H) levels, thereby contributing to lipid metabolism, bone development, and neuronal function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ran Li, Jiping Yue, Yu Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CLOCK/BMAL1 regulates human nocturnin transcription through binding to the E-box of nocturnin promoter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-008-9846-x"}], "href": "https://doi.org/10.1007/s11010-008-9846-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18587630"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18587630"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yi-Cheng Chang, Yen-Feng Chiu, Pi-Hua Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic variation in the NOC gene is associated with body mass index in Chinese subjects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0069622"}], "href": "https://doi.org/10.1371/journal.pone.0069622"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23922759"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23922759"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Patricia Couto, Debora Miranda, Renalice Vieira, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association between CLOCK, PER3 and CCRN4L with non‑small cell lung cancer in Brazilian patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2014.2224"}], "href": "https://doi.org/10.3892/mmr.2014.2224"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24821610"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24821610"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Elizabeth T Abshire, Jennifer Chasseur, Jennifer A Bohn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gky412"}], "href": "https://doi.org/10.1093/nar/gky412"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29860338"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29860338"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kelsey L Hughes, Elizabeth T Abshire, Aaron C Goldstrohm "}, {"type": "b", "children": [{"type": "t", "text": "Regulatory roles of vertebrate Nocturnin: insights and remaining mysteries."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2018.1526541"}], "href": "https://doi.org/10.1080/15476286.2018.1526541"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30257600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30257600"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Michael A Estrella, Jin Du, Alexei Korennykh "}, {"type": "b", "children": [{"type": "t", "text": "Crystal Structure of Human Nocturnin Catalytic Domain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-34615-0"}], "href": "https://doi.org/10.1038/s41598-018-34615-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30389976"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30389976"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Massimo Bracci, Alfredo Copertaro, Veronica Ciarapica, et al. "}, {"type": "b", "children": [{"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "NOCTURNIN"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Gene Diurnal Variation in Healthy Volunteers and Expression Levels in Shift Workers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2019/7582734"}], "href": "https://doi.org/10.1155/2019/7582734"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31467910"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31467910"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Elizabeth T Abshire, Kelsey L Hughes, Rucheng Diao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential processing and localization of human Nocturnin controls metabolism of mRNA and nicotinamide adenine dinucleotide cofactors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.RA120.012618"}], "href": "https://doi.org/10.1074/jbc.RA120.012618"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32839274"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32839274"}]}]}]}
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| NCBI Gene ID | 25819 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NOCT has 2,294 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 39 datasets.
Click the + buttons to view associations for NOCT from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NOCT gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of NOCT gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with NOCT protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with NOCT gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of NOCT gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of NOCT gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing NOCT protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with NOCT protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of NOCT protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by NOCT gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with NOCT gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with NOCT gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving NOCT gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving NOCT gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing NOCT protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing NOCT protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by NOCT gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by NOCT gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of NOCT gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of NOCT gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of NOCT gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with NOCT gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of NOCT gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of NOCT gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of NOCT gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by NOCT gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of NOCT gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of NOCT gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving NOCT protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving NOCT protein from the Wikipathways PFOCR 2024 dataset. | |
| Reactome Pathways 2024 | pathways involving NOCT protein from the Reactome Pathways 2024 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of NOCT gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of NOCT gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of NOCT gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of NOCT gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of NOCT gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of NOCT protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with NOCT protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving NOCT protein from the WikiPathways Pathways 2024 dataset. | |