| HGNC Family | Homeoboxes, Paired boxes (PAX) |
| Name | paired box 3 |
| Description | This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development. Mutations in paired box gene 3 are associated with Waardenburg syndrome, craniofacial-deafness-hand syndrome, and alveolar rhabdomyosarcoma. The translocation t(2;13)(q35;q14), which represents a fusion between PAX3 and the forkhead gene, is a frequent finding in alveolar rhabdomyosarcoma. Alternative splicing results in transcripts encoding isoforms with different C-termini. [provided by RefSeq, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPAX3 is a highly conserved paired‐box transcription factor with essential roles in normal embryonic development. In precursors of skeletal muscle and neural crest–derived lineages, wild‐type PAX3 functions to regulate cell survival, migration, proliferation and differentiation. For example, PAX3 directly controls myogenic gene expression—including regulation of Myf5 in the hypaxial somite—and is transiently expressed in normal fetal muscle without underlying chromosomal rearrangements, indicating a key role in orchestrating myogenesis and neural tube closure (see, for example."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " Moreover, common genetic variants in PAX3 contribute to normal craniofacial and adipocyte progenitor development and have been linked to congenital pigmentary and facial dysmorphism as seen in syndromes such as Waardenburg (for example."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the realm of oncogenesis, PAX3 is most notably implicated through its participation in chromosomal translocations that generate potent fusion oncoproteins in pediatric soft‐tissue sarcomas, particularly alveolar rhabdomyosarcoma (ARMS) and biphenotypic sinonasal sarcoma. By fusing its DNA‐binding domains with transcriptional activation domains from partners such as FOXO1, NCOA1/NCOA2 or MAML3, the resulting chimeric proteins (e.g., PAX3–FOXO1) aberrantly reprogram the cis‐regulatory landscape, drive autoregulatory loops with myogenic master regulators, promote cell cycle progression and bypass cellular senescence, and interfere with myogenic differentiation. These fusion proteins not only upregulate key targets such as IGF‐I receptor and MYCN but also create vulnerabilities exploitable by agents that disrupt their epigenetic or signaling dependencies (for example."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "27"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the melanocytic lineage, PAX3 functions in tandem with other transcription factors—including MITF and SOX10—to regulate genes central to melanocyte specification, differentiation, and response to environmental cues. Here, PAX3 not only directly regulates MITF but also operates within a network modulated by growth factors (e.g., TGF‐β) and microRNAs, thereby contributing to UV‐induced pigmentation as well as to melanoma progression when its regulation is disrupted."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "28", "end_ref": "32"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies highlight that PAX3’s activity is further modulated by post‐transcriptional mechanisms, protein–protein interactions and epigenetic regulators. Interactions with molecules such as PC‑TP—as well as modulation by regulatory circuits involving microRNAs and chromatin modifiers—fine‐tune PAX3 function in both normal development and oncogenic contexts. These insights not only deepen our mechanistic understanding of PAX3 signaling but also open avenues for targeted therapeutic intervention in diseases ranging from congenital craniofacial and pigmentary disorders to aggressive fusion‐positive sarcomas."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "33", "end_ref": "35"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "D Ayalon, T Glaser, H Werner "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional regulation of IGF-I receptor gene expression by the PAX3-FKHR oncoprotein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Growth Horm IGF Res (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1054/ghir.2001.0244"}], "href": "https://doi.org/10.1054/ghir.2001.0244"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11735247"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11735247"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "T I Chang, M Horal, S K Jain, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oxidant regulation of gene expression and neural tube development: Insights gained from diabetic pregnancy on molecular causes of neural tube defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetologia (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00125-003-1063-2"}], "href": "https://doi.org/10.1007/s00125-003-1063-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12739027"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12739027"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Lola Bajard, Frédéric Relaix, Mounia Lagha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel genetic hierarchy functions during hypaxial myogenesis: Pax3 directly activates Myf5 in muscle progenitor cells in the limb."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.382806"}], "href": "https://doi.org/10.1101/gad.382806"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16951257"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16951257"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lavinia Paternoster, Alexei I Zhurov, Arshed M Toma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study of three-dimensional facial morphology identifies a variant in PAX3 associated with nasion position."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2011.12.021"}], "href": "https://doi.org/10.1016/j.ajhg.2011.12.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22341974"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22341974"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Huiling Yuan, Fujun Qin, Mercedeh Movassagh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A chimeric RNA characteristic of rhabdomyosarcoma in normal myogenesis process."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Discov (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/2159-8290.CD-13-0186"}], "href": "https://doi.org/10.1158/2159-8290.CD-13-0186"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24089019"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24089019"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Tala Mohsen-Kanson, Anne-Laure Hafner, Brigitte Wdziekonski, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differentiation of human induced pluripotent stem cells into brown and white adipocytes: role of Pax3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/stem.1607"}], "href": "https://doi.org/10.1002/stem.1607"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24302443"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24302443"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Lara P Fernandez, Roger L Milne, Guillermo Pita, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pigmentation-related genes and their implication in malignant melanoma susceptibility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Dermatol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1600-0625.2009.00846.x"}], "href": "https://doi.org/10.1111/j.1600-0625.2009.00846.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19320733"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19320733"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Michael B Nicholl, David Elashoff, Hiroya Takeuchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular upstaging based on paraffin-embedded sentinel lymph nodes: ten-year follow-up confirms prognostic utility in melanoma patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Surg (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/SLA.0b013e3181fca894"}], "href": "https://doi.org/10.1097/SLA.0b013e3181fca894"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21135695"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21135695"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Salah Boudjadi, Bishwanath Chatterjee, Wenyue Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The expression and function of PAX3 in development and disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2018.04.087"}], "href": "https://doi.org/10.1016/j.gene.2018.04.087"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29730428"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29730428"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Poul H B Sorensen, James C Lynch, Stephen J Qualman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3-FKHR and PAX7-FKHR gene fusions are prognostic indicators in alveolar rhabdomyosarcoma: a report from the children's oncology group."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Oncol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1200/JCO.2002.03.137"}], "href": "https://doi.org/10.1200/JCO.2002.03.137"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12039929"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12039929"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Daniel Williamson, Edoardo Missiaglia, Aurélien de Reyniès, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fusion gene-negative alveolar rhabdomyosarcoma is clinically and molecularly indistinguishable from embryonal rhabdomyosarcoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Oncol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1200/JCO.2009.26.3814"}], "href": "https://doi.org/10.1200/JCO.2009.26.3814"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20351326"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20351326"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Berkley E Gryder, Marielle E Yohe, Hsien-Chao Chou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3-FOXO1 Establishes Myogenic Super Enhancers and Confers BET Bromodomain Vulnerability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Discov (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/2159-8290.CD-16-1297"}], "href": "https://doi.org/10.1158/2159-8290.CD-16-1297"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28446439"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28446439"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Marco Wachtel, Marcel Dettling, Eva Koscielniak, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gene expression signatures identify rhabdomyosarcoma subtypes and detect a novel t(2;2)(q35;p23) translocation fusing PAX3 to NCOA1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-04-0844"}], "href": "https://doi.org/10.1158/0008-5472.CAN-04-0844"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15313887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15313887"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Chenguang Gong, Yoon Ki Kim, Collynn F Woeller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1717309"}], "href": "https://doi.org/10.1101/gad.1717309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19095803"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19095803"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Janos Sumegi, Renae Streblow, Robert W Frayer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Recurrent t(2;2) and t(2;8) translocations in rhabdomyosarcoma without the canonical PAX-FOXO1 fuse PAX3 to members of the nuclear receptor transcriptional coactivator family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Chromosomes Cancer (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gcc.20731"}], "href": "https://doi.org/10.1002/gcc.20731"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19953635"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19953635"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Xiaoke Wang, Krista L Bledsoe, Rondell P Graham, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Recurrent PAX3-MAML3 fusion in biphenotypic sinonasal sarcoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.2989"}], "href": "https://doi.org/10.1038/ng.2989"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24859338"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24859338"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Lisa E S Crose, Kathleen A Galindo, Julie Grondin Kephart, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alveolar rhabdomyosarcoma-associated PAX3-FOXO1 promotes tumorigenesis via Hippo pathway suppression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI67087"}], "href": "https://doi.org/10.1172/JCI67087"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24334454"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24334454"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "M Ebauer, M Wachtel, F K Niggli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comparative expression profiling identifies an in vivo target gene signature with TFAP2B as a mediator of the survival function of PAX3/FKHR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1210525"}], "href": "https://doi.org/10.1038/sj.onc.1210525"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17525748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17525748"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Shih-Chiang Huang, Ronald A Ghossein, Justin A Bishop, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel PAX3-NCOA1 Fusions in Biphenotypic Sinonasal Sarcoma With Focal Rhabdomyoblastic Differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Surg Pathol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/PAS.0000000000000492"}], "href": "https://doi.org/10.1097/PAS.0000000000000492"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26371783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26371783"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Oana Tomescu, Shujuan J Xia, Donna Strezlecki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inducible short-term and stable long-term cell culture systems reveal that the PAX3-FKHR fusion oncoprotein regulates CXCR4, PAX3, and PAX7 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lab Invest (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/labinvest.3700125"}], "href": "https://doi.org/10.1038/labinvest.3700125"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15184910"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15184910"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Wendy Roeb, Antonia Boyer, Webster K Cavenee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3-FOXO1 controls expression of the p57Kip2 cell-cycle regulator through degradation of EGR1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0708910104"}], "href": "https://doi.org/10.1073/pnas.0708910104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17986608"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17986608"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Xingbin Wang, Oscar L Lopez, Robert A Sweet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic determinants of disease progression in Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Alzheimers Dis (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3233/JAD-140729"}], "href": "https://doi.org/10.3233/JAD-140729"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25114068"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25114068"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Diana A Corao, Jaclyn A Biegel, Cheryl M Coffin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ALK expression in rhabdomyosarcomas: correlation with histologic subtype and fusion status."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pediatr Dev Pathol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2350/08-03-0434.1"}], "href": "https://doi.org/10.2350/08-03-0434.1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18788887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18788887"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Irina V Lagutina, Virginia Valentine, Fabrizio Picchione, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Modeling of the human alveolar rhabdomyosarcoma Pax3-Foxo1 chromosome translocation in mouse myoblasts using CRISPR-Cas9 nuclease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1004951"}], "href": "https://doi.org/10.1371/journal.pgen.1004951"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25659124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25659124"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Gabriela E Mercado, Shujuan J Xia, Chune Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of PAX3-FKHR-regulated genes differentially expressed between alveolar and embryonal rhabdomyosarcoma: focus on MYCN as a biologically relevant target."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Chromosomes Cancer (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gcc.20554"}], "href": "https://doi.org/10.1002/gcc.20554"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18335505"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18335505"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Puspa R Pandey, Bishwanath Chatterjee, Mary E Olanich, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3-FOXO1 is essential for tumour initiation and maintenance but not recurrence in a human myoblast model of rhabdomyosarcoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pathol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/path.4867"}], "href": "https://doi.org/10.1002/path.4867"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28138962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28138962"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Tatyana Danyukova, Khandsuren Ariunbat, Melanie Thelen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of CLN7 results in depletion of soluble lysosomal proteins and impaired mTOR reactivation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddy076"}], "href": "https://doi.org/10.1093/hmg/ddy076"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29514215"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29514215"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Guang Yang, Yitang Li, Emi K Nishimura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibition of PAX3 by TGF-beta modulates melanocyte viability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2008.11.002"}], "href": "https://doi.org/10.1016/j.molcel.2008.11.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19026785"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19026785"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Sandra Medic, Mel Ziman "}, {"type": "b", "children": [{"type": "t", "text": "PAX3 expression in normal skin melanocytes and melanocytic lesions (naevi and melanomas)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0009977"}], "href": "https://doi.org/10.1371/journal.pone.0009977"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20421967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20421967"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "Salma Begum, Nashmil Emami, Albert Cheung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cell-type-specific regulation of distinct sets of gene targets by Pax3 and Pax3/FKHR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1208315"}], "href": "https://doi.org/10.1038/sj.onc.1208315"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15688035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15688035"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Elise Bonvin, Paola Falletta, Heather Shaw, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A phosphatidylinositol 3-kinase-Pax3 axis regulates Brn-2 expression in melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01067-12"}], "href": "https://doi.org/10.1128/MCB.01067-12"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22988297"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22988297"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Rebecca S Plummer, Christopher R Shea, Maria Nelson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3 expression in primary melanomas and nevi."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mod Pathol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/modpathol.3801019"}], "href": "https://doi.org/10.1038/modpathol.3801019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18327212"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18327212"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Keishi Kanno, Michele K Wu, Diana S Agate, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interacting proteins dictate function of the minimal START domain phosphatidylcholine transfer protein/StarD2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M703745200"}], "href": "https://doi.org/10.1074/jbc.M703745200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17704541"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17704541"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "R Ciarapica, M De Salvo, E Carcarino, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Polycomb group (PcG) protein EZH2 supports the survival of PAX3-FOXO1 alveolar rhabdomyosarcoma by repressing FBXO32 (Atrogin1/MAFbx)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2013.471"}], "href": "https://doi.org/10.1038/onc.2013.471"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24213577"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24213577"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Joseph B Mascarenhas, Erica L Littlejohn, Rebecca J Wolsky, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX3 and SOX10 activate MET receptor expression in melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Melanoma Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1755-148X.2010.00667.x"}], "href": "https://doi.org/10.1111/j.1755-148X.2010.00667.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20067553"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20067553"}]}]}]}
|
| Synonyms | WS1, CDHS, WS3, HUP2 |
| Proteins | PAX3_HUMAN |
| NCBI Gene ID | 5077 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
PAX3 has 7,924 functional associations with biological entities spanning 9 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 118 datasets.
Click the + buttons to view associations for PAX3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of PAX3 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PAX3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of PAX3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of PAX3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| Biocarta Pathways | pathways involving PAX3 protein from the Biocarta Pathways dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of PAX3 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of PAX3 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of PAX3 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of PAX3 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of PAX3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of PAX3 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene Mutation Profiles | cell lines with PAX3 gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with PAX3 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PAX3 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of PAX3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of PAX3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with PAX3 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of PAX3 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing PAX3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing PAX3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with PAX3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with PAX3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| CORUM Protein Complexes | protein complexs containing PAX3 protein from the CORUM Protein Complexes dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of PAX3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with PAX3 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with PAX3 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with PAX3 gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with PAX3 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by PAX3 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores | diseases involving PAX3 gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores 2025 | diseases involving PAX3 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with PAX3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with PAX3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with PAX3 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with PAX3 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PAX3 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PAX3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of PAX3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing PAX3 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with PAX3 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with PAX3 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of PAX3 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with PAX3 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing PAX3 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of PAX3 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving PAX3 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving PAX3 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving PAX3 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing PAX3 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by PAX3 gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by PAX3 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by PAX3 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of PAX3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of PAX3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of PAX3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PAX3 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of PAX3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with PAX3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with PAX3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with PAX3 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with PAX3 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of PAX3 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of PAX3 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of PAX3 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPO Gene-Disease Associations | phenotypes associated with PAX3 gene by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset. | |
| Hub Proteins Protein-Protein Interactions | interacting hub proteins for PAX3 from the curated Hub Proteins Protein-Protein Interactions dataset. | |
| HuBMAP Azimuth Cell Type Annotations | cell types associated with PAX3 gene from the HuBMAP Azimuth Cell Type Annotations dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with PAX3 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for PAX3 protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of PAX3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of PAX3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of PAX3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| KEA Substrates of Kinases | kinases that phosphorylate PAX3 protein from the curated KEA Substrates of Kinases dataset. | |
| KEGG Pathways 2026 | pathways involving PAX3 protein from the KEGG Pathways 2026 dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of PAX3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of PAX3 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of PAX3 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing PAX3 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain PAX3 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by PAX3 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting PAX3 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of PAX3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by PAX3 gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of PAX3 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NURSA Protein Complexes | protein complexs containing PAX3 protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| OMIM Gene-Disease Associations | phenotypes associated with PAX3 gene from the curated OMIM Gene-Disease Associations dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for PAX3 from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of PAX3 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of PAX3 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving PAX3 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving PAX3 protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with PAX3 protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| PhosphoSitePlus Substrates of Kinases | kinases that phosphorylate PAX3 protein from the curated PhosphoSitePlus Substrates of Kinases dataset. | |
| PID Pathways | pathways involving PAX3 protein from the PID Pathways dataset. | |
| Reactome Pathways 2024 | pathways involving PAX3 protein from the Reactome Pathways 2024 dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of PAX3 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PAX3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of PAX3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of PAX3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sanger Dependency Map Cancer Cell Line Proteomics | cell lines associated with PAX3 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset. | |
| Tabula Sapiens Gene-Cell Associations | cell types with high or low expression of PAX3 gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of PAX3 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of PAX3 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of PAX3 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of PAX3 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of PAX3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PAX3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of PAX3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PAX3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with PAX3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with PAX3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2014 | pathways involving PAX3 protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving PAX3 protein from the WikiPathways Pathways 2024 dataset. | |