PAX6 Gene

HGNC Family Paired boxes (PAX), Homeoboxes
Name paired box 6
Description This gene encodes paired box protein Pax-6, one of many human homologs of the Drosophila melanogaster gene prd. In addition to a conserved paired box domain, a hallmark feature of this gene family, the encoded protein also contains a homeobox domain. Both domains are known to bind DNA and function as regulators of gene transcription. Activity of this protein is key in the development of neural tissues, particularly the eye. This gene is regulated by multiple enhancers located up to hundreds of kilobases distant from this locus. Mutations in this gene or in the enhancer regions can cause ocular disorders such as aniridia and Peter's anomaly. Use of alternate promoters and alternative splicing results in multiple transcript variants encoding different isoforms. Interestingly, inclusion of a particular alternate coding exon has been shown to increase the length of the paired box domain and alter its DNA binding specificity. Consequently, isoforms that carry the shorter paired box domain regulate a different set of genes compared to the isoforms carrying the longer paired box domain. [provided by RefSeq, Mar 2019]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPAX6 is a quintessential master regulator that orchestrates early neuroectoderm and ocular development. In human embryos and stem‐cell–derived neuroectoderm, PAX6 is uniformly expressed and acts as a transcriptional determinant that drives the transition from pluripotency to neural fate, while its dosage and autoregulatory mechanisms finely tune the spatial and temporal expression patterns critical for proper brain regionalization, lens induction, and retinal differentiation. PAX6 furthermore plays indispensable roles in the patterning of neural progenitors and the establishment of neurogenic niches, and its mutations underline structural brain anomalies as well as classic ocular malformations such as aniridia and coloboma. These central functions have been elucidated by studies demonstrating its binding to key gene promoters and integration of extracellular signals to activate tissue‐specific differentiation programs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "25"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn ocular tissues, PAX6 additionally governs cell‐fate decisions that specify the retinal lineage and the identity of the corneal epithelium and its stem cell compartment. In paradigms of corneal differentiation and limbal stem cell maintenance, PAX6 cooperates with other transcription factors and signaling pathways (including WNT, TGF‑β and FGF) to direct differentiation toward ocular surface fates, while its dysregulation or loss causes a fate shift toward skin-like epithelium and contributes to disorders such as aniridia and myopia. Moreover, specific isoforms of PAX6—such as the Pax6(+5a) variant—exhibit distinct DNA-binding properties that, upon ectopic expression, can induce a retina-like architecture or mediate transdifferentiation of retinal pigment epithelial cells, underscoring its potent instructive capacity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "26", "end_ref": "37"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its well‐established roles in the central nervous system and eye, PAX6’s transcriptional networks extend to endocrine tissues and cancer. In pancreatic islet cells, for instance, PAX6 maintains β‑cell identity by activating genes required for insulin production while repressing alternative islet hormones, and in α‑cells it cooperates with partners such as c‑Maf to fine-tune glucagon gene transcription. Moreover, interactions between distinct PAX6 isoforms and posttranslational modifications (for example, HIPK2-mediated phosphorylation) enhance its transcriptional activity, while multidomain dynamics ensure efficient promoter targeting. Intriguingly, altered PAX6 expression—whether via mutations, aberrant methylation, or dysregulated enhancer activity—has been implicated in tumorigenesis in gliomas and pancreatic carcinomas, highlighting its broad impact on cell fate and maintenance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "38", "end_ref": "49"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Caroline Griffin, Dirk A Kleinjan, Brendan Doe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New 3' elements control Pax6 expression in the developing pretectum, neural retina and olfactory region."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mech Dev (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0925-4773(01)00646-3"}], "href": "https://doi.org/10.1016/s0925-4773(01"}, {"type": "t", "text": "00646-3) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11850181"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11850181"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Noriyuki Azuma, Yuki Yamaguchi, Hiroshi Handa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutations of the PAX6 gene detected in patients with a variety of optic-nerve malformations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/375555"}], "href": "https://doi.org/10.1086/375555"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12721955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12721955"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Tejal N Mitchell, Samantha L Free, Kathleen A Williamson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Polymicrogyria and absence of pineal gland due to PAX6 mutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.10576"}], "href": "https://doi.org/10.1002/ana.10576"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12731001"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12731001"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zoë Ellison-Wright, Isobel Heyman, Ian Frampton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Heterozygous PAX6 mutation, adult brain structure and fronto-striato-thalamic function in a human family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurosci (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1460-9568.2004.03236.x"}], "href": "https://doi.org/10.1111/j.1460-9568.2004.03236.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15066147"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15066147"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yi-Hong Zhou, Xiaosong Wu, Fang Tan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 suppresses growth of human glioblastoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurooncol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11060-004-1720-4"}], "href": "https://doi.org/10.1007/s11060-004-1720-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15735909"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15735909"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ioanna Tzoulaki, Ian M S White, Isabel M Hanson "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 mutations: genotype-phenotype correlations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genet (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2156-6-27"}], "href": "https://doi.org/10.1186/1471-2156-6-27"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15918896"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15918896"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "A M Hever, K A Williamson, V van Heyningen "}, {"type": "b", "children": [{"type": "t", "text": "Developmental malformations of the eye: the role of PAX6, SOX2 and OTX2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Genet (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1399-0004.2006.00619.x"}], "href": "https://doi.org/10.1111/j.1399-0004.2006.00619.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16712695"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16712695"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Martine Manuel, Petrina A Georgala, Catherine B Carr, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Controlled overexpression of Pax6 in vivo negatively autoregulates the Pax6 locus, causing cell-autonomous defects of late cortical progenitor proliferation with little effect on cortical arealization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.02764"}], "href": "https://doi.org/10.1242/dev.02764"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17202185"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17202185"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Anouk Dansault, Gabriel David, Claire Schwartz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Three new PAX6 mutations including one causing an unusual ophthalmic phenotype associated with neurodevelopmental abnormalities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2007)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17417613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17417613"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Doris-Eva Bamiou, Samantha L Free, Sanjay M Sisodiya, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Auditory interhemispheric transfer deficits, hearing difficulties, and brain magnetic resonance imaging abnormalities in children with congenital aniridia due to PAX6 mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Pediatr Adolesc Med (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/archpedi.161.5.463"}], "href": "https://doi.org/10.1001/archpedi.161.5.463"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17485622"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17485622"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "David O Robinson, Rachel J Howarth, Kathleen A Williamson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic analysis of chromosome 11p13 and the PAX6 gene in a series of 125 cases referred with aniridia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.32209"}], "href": "https://doi.org/10.1002/ajmg.a.32209"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18241071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18241071"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Noriko Osumi, Hiroshi Shinohara, Keiko Numayama-Tsuruta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Concise review: Pax6 transcription factor contributes to both embryonic and adult neurogenesis as a multifunctional regulator."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1634/stemcells.2007-0884"}], "href": "https://doi.org/10.1634/stemcells.2007-0884"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18467663"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18467663"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Nadhim Bayatti, Subrot Sarma, Christopher Shaw, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Progressive loss of PAX6, TBR2, NEUROD and TBR1 mRNA gradients correlates with translocation of EMX2 to the cortical plate during human cortical development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurosci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1460-9568.2008.06475.x"}], "href": "https://doi.org/10.1111/j.1460-9568.2008.06475.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18973570"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18973570"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Melanie Hingorani, Kathleen A Williamson, Anthony T Moore, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Detailed ophthalmologic evaluation of 43 individuals with PAX6 mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.08-2827"}], "href": "https://doi.org/10.1167/iovs.08-2827"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19218613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19218613"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Yi-Wen Hsieh, Xian-Jie Yang "}, {"type": "b", "children": [{"type": "t", "text": "Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neural Dev (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1749-8104-4-32"}], "href": "https://doi.org/10.1186/1749-8104-4-32"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19686589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19686589"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Hana Abouzeid, Mohamed A Youssef, Nihal ElShakankiri, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 aniridia and interhemispheric brain anomalies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2009)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19862335"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19862335"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Petrina A Georgala, Martine Manuel, David J Price "}, {"type": "b", "children": [{"type": "t", "text": "The generation of superficial cortical layers is regulated by levels of the transcription factor Pax6."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cereb Cortex (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/cercor/bhq061"}], "href": "https://doi.org/10.1093/cercor/bhq061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20413449"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20413449"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Xiaoqing Zhang, Cindy T Huang, Jing Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pax6 is a human neuroectoderm cell fate determinant."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2010.04.017"}], "href": "https://doi.org/10.1016/j.stem.2010.04.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20621053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20621053"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Jovica Ninkovic, Luisa Pinto, Stefania Petricca, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcription factor Pax6 regulates survival of dopaminergic olfactory bulb neurons via crystallin αA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2010.09.030"}], "href": "https://doi.org/10.1016/j.neuron.2010.09.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21092858"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21092858"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Ohad Shaham, Yotam Menuchin, Chen Farhy, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pax6: a multi-level regulator of ocular development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Prog Retin Eye Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.preteyeres.2012.04.002"}], "href": "https://doi.org/10.1016/j.preteyeres.2012.04.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22561546"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22561546"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Margarita Leyva-Leyva, Lourdes Barrera, César López-Camarillo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of mesenchymal stem cell subpopulations from human amniotic membrane with dissimilar osteoblastic potential."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells Dev (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/scd.2012.0359"}], "href": "https://doi.org/10.1089/scd.2012.0359"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23211052"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23211052"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Shipra Bhatia, Hemant Bengani, Margaret Fish, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2013.10.028"}], "href": "https://doi.org/10.1016/j.ajhg.2013.10.028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24290376"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24290376"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Akshay Bhinge, Jeremie Poschmann, Seema C Namboori, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-135b is a direct PAX6 target and specifies human neuroectoderm by inhibiting TGF-β/BMP signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/embj.201387215"}], "href": "https://doi.org/10.1002/embj.201387215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24802670"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24802670"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Brett Deml, Linda M Reis, Emmanuelle Lemyre, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel mutations in PAX6, OTX2 and NDP in anophthalmia, microphthalmia and coloboma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Hum Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ejhg.2015.155"}], "href": "https://doi.org/10.1038/ejhg.2015.155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26130484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26130484"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Morad Ansari, Jacqueline Rainger, Isabel M Hanson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic Analysis of 'PAX6-Negative' Individuals with Aniridia or Gillespie Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0153757"}], "href": "https://doi.org/10.1371/journal.pone.0153757"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27124303"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27124303"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Tie Li, Luo Lu "}, {"type": "b", "children": [{"type": "t", "text": "Epidermal growth factor-induced proliferation requires down-regulation of Pax6 in corneal epithelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M412458200"}], "href": "https://doi.org/10.1074/jbc.M412458200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15659382"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15659382"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Noriyuki Azuma, Keiko Tadokoro, Astuko Asaka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Pax6 isoform bearing an alternative spliced exon promotes the development of the neural retinal structure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddi069"}], "href": "https://doi.org/10.1093/hmg/ddi069"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15677484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15677484"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Noriyuki Azuma, Keiko Tadokoro, Astuko Asaka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transdifferentiation of the retinal pigment epithelia to the neural retina by transfer of the Pax6 transcriptional factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddi098"}], "href": "https://doi.org/10.1093/hmg/ddi098"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15757974"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15757974"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Donald O Mutti, Margaret E Cooper, Sarah O'Brien, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Candidate gene and locus analysis of myopia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2007)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17653045"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17653045"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "Wei Han, Kim Hung Leung, Wai Yan Fung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of PAX6 polymorphisms with high myopia in Han Chinese nuclear families."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.07-0813"}], "href": "https://doi.org/10.1167/iovs.07-0813"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19124844"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19124844"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Chung-Ling Liang, Edward Hsi, Ku-Chung Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A functional polymorphism at 3'UTR of the PAX6 gene may confer risk for extreme myopia in the Chinese."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.10-5859"}], "href": "https://doi.org/10.1167/iovs.10-5859"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21421876"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21421876"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Ku-Chung Chen, Edward Hsi, Ching-Yu Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-328 may influence myopia development by mediating the PAX6 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.11-9272"}], "href": "https://doi.org/10.1167/iovs.11-9272"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22447870"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22447870"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Ivan Prokudin, Cas Simons, John R Grigg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exome sequencing in developmental eye disease leads to identification of causal variants in GJA8, CRYGC, PAX6 and CYP1B1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Hum Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ejhg.2013.268"}], "href": "https://doi.org/10.1038/ejhg.2013.268"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24281366"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24281366"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "Hong Ouyang, Yuanchao Xue, Ying Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "WNT7A and PAX6 define corneal epithelium homeostasis and pathogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature13465"}], "href": "https://doi.org/10.1038/nature13465"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25030175"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25030175"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Gen Li, Fan Xu, Jie Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcription Factor PAX6 (Paired Box 6) Controls Limbal Stem Cell Lineage in Development and Disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.662940"}], "href": "https://doi.org/10.1074/jbc.M115.662940"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26045558"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26045558"}]}, {"type": "r", "ref": 36, "children": [{"type": "t", "text": "Koji Kitazawa, Takafusa Hikichi, Takahiro Nakamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 regulates human corneal epithelium cell identity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Eye Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.exer.2016.11.005"}], "href": "https://doi.org/10.1016/j.exer.2016.11.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27818314"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27818314"}]}, {"type": "r", "ref": 37, "children": [{"type": "t", "text": "Dulce Lima Cunha, Gavin Arno, Marta Corton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Spectrum of "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "PAX6"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Mutations and Genotype-Phenotype Correlations in the Eye."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes (Basel) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/genes10121050"}], "href": "https://doi.org/10.3390/genes10121050"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31861090"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31861090"}]}, {"type": "r", "ref": 38, "children": [{"type": "t", "text": "I Mikkola, J A Bruun, T Holm, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Superactivation of Pax6-mediated transactivation from paired domain-binding sites by dna-independent recruitment of different homeodomain proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M008882200"}], "href": "https://doi.org/10.1074/jbc.M008882200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11069920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11069920"}]}, {"type": "r", "ref": 39, "children": [{"type": "t", "text": "Eun A Kim, Yoon Tae Noh, Myung-Jeom Ryu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phosphorylation and transactivation of Pax6 by homeodomain-interacting protein kinase 2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M507227200"}], "href": "https://doi.org/10.1074/jbc.M507227200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16407227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16407227"}]}, {"type": "r", "ref": 40, "children": [{"type": "t", "text": "Norihide Yokoi, Masao Kanamori, Yukio Horikawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association studies of variants in the genes involved in pancreatic beta-cell function in type 2 diabetes in Japanese subjects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/db05-1203"}], "href": "https://doi.org/10.2337/db05-1203"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16873704"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16873704"}]}, {"type": "r", "ref": 41, "children": [{"type": "t", "text": "Yvan Gosmain, Isabelle Avril, Aline Mamin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pax-6 and c-Maf functionally interact with the alpha-cell-specific DNA element G1 in vivo to promote glucagon gene expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M702795200"}], "href": "https://doi.org/10.1074/jbc.M702795200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17901057"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17901057"}]}, {"type": "r", "ref": 42, "children": [{"type": "t", "text": "J H Wen, Y Y Chen, S J Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Paired box 6 (PAX6) regulates glucose metabolism via proinsulin processing mediated by prohormone convertase 1/3 (PC1/3)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetologia (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00125-008-1210-x"}], "href": "https://doi.org/10.1007/s00125-008-1210-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19034419"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19034419"}]}, {"type": "r", "ref": 43, "children": [{"type": "t", "text": "Joseph B Mascarenhas, Kacey P Young, Erica L Littlejohn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 is expressed in pancreatic cancer and actively participates in cancer progression through activation of the MET tyrosine kinase receptor gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.047209"}], "href": "https://doi.org/10.1074/jbc.M109.047209"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19651775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19651775"}]}, {"type": "r", "ref": 44, "children": [{"type": "t", "text": "Yvan Gosmain, Eric Marthinet, Claire Cheyssac, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pax6 controls the expression of critical genes involved in pancreatic {alpha} cell differentiation and function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.147215"}], "href": "https://doi.org/10.1074/jbc.M110.147215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20592023"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20592023"}]}, {"type": "r", "ref": 45, "children": [{"type": "t", "text": "Dana Vuzman, Michal Polonsky, Yaakov Levy "}, {"type": "b", "children": [{"type": "t", "text": "Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biophys J (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bpj.2010.06.007"}], "href": "https://doi.org/10.1016/j.bpj.2010.06.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20713004"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20713004"}]}, {"type": "r", "ref": 46, "children": [{"type": "t", "text": "Cathy B Moelans, Anoek H J Verschuur-Maes, Paul J van Diest "}, {"type": "b", "children": [{"type": "t", "text": "Frequent promoter hypermethylation of BRCA2, CDH13, MSH6, PAX5, PAX6 and WT1 in ductal carcinoma in situ and invasive breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pathol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/path.2930"}], "href": "https://doi.org/10.1002/path.2930"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21710692"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21710692"}]}, {"type": "r", "ref": 47, "children": [{"type": "t", "text": "Yanwen Li, Yuehui Li, Yanhong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6, a novel target of microRNA-7, promotes cellular proliferation and invasion in human colorectal cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dig Dis Sci (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10620-013-2929-x"}], "href": "https://doi.org/10.1007/s10620-013-2929-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24185687"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24185687"}]}, {"type": "r", "ref": 48, "children": [{"type": "t", "text": "M Diana Neely, Michael J Litt, Andrew M Tidball, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DMH1, a highly selective small molecule BMP inhibitor promotes neurogenesis of hiPSCs: comparison of PAX6 and SOX1 expression during neural induction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "ACS Chem Neurosci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/cn300029t"}], "href": "https://doi.org/10.1021/cn300029t"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22860217"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22860217"}]}, {"type": "r", "ref": 49, "children": [{"type": "t", "text": "Avital Swisa, Dana Avrahami, Noa Eden, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 maintains β cell identity by repressing genes of alternative islet cell types."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI88015"}], "href": "https://doi.org/10.1172/JCI88015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27941241"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27941241"}]}]}]}
Synonyms AN2, D11S812E, ASGD5, AN, FVH1, WAGR, MGDA
Proteins PAX6_HUMAN
NCBI Gene ID 5080
API
Download Associations
Predicted Functions View PAX6's ARCHS4 Predicted Functions.
Co-expressed Genes View PAX6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PAX6's ARCHS4 Predicted Functions.

Functional Associations

PAX6 has 10,649 functional associations with biological entities spanning 8 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 134 datasets.

Click the + buttons to view associations for PAX6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PAX6 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles tissues with high or low expression of PAX6 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PAX6 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of PAX6 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of PAX6 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of PAX6 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PAX6 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with PAX6 protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with PAX6 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PAX6 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of PAX6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of PAX6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations phenotypes associated with PAX6 gene from the curated ClinVar Gene-Phenotype Associations dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with PAX6 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PAX6 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing PAX6 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing PAX6 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores cellular components co-occuring with PAX6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PAX6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
CORUM Protein Complexes protein complexs containing PAX6 protein from the CORUM Protein Complexes dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PAX6 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with PAX6 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with PAX6 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
CTD Gene-Disease Associations diseases associated with PAX6 gene/protein from the curated CTD Gene-Disease Associations dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by PAX6 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores diseases involving PAX6 gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving PAX6 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with PAX6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with PAX6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PAX6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with PAX6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with PAX6 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PAX6 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PAX6 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of PAX6 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing PAX6 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GAD Gene-Disease Associations diseases associated with PAX6 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
GAD High Level Gene-Disease Associations diseases associated with PAX6 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with PAX6 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing PAX6 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of PAX6 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2015 biological processes involving PAX6 gene from the curated GO Biological Process Annotations 2015 dataset.
GO Biological Process Annotations 2023 biological processes involving PAX6 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving PAX6 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2015 cellular components containing PAX6 protein from the curated GO Cellular Component Annotations 2015 dataset.
GO Cellular Component Annotations 2023 cellular components containing PAX6 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing PAX6 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2015 molecular functions performed by PAX6 gene from the curated GO Molecular Function Annotations 2015 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by PAX6 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by PAX6 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PAX6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of PAX6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with PAX6 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
GWASdb SNP-Disease Associations diseases associated with PAX6 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with PAX6 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
HPA Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of PAX6 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of PAX6 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
HPO Gene-Disease Associations phenotypes associated with PAX6 gene by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset.
Hub Proteins Protein-Protein Interactions interacting hub proteins for PAX6 from the curated Hub Proteins Protein-Protein Interactions dataset.
HuBMAP ASCT+B Annotations cell types associated with PAX6 gene from the HuBMAP ASCT+B dataset.
HuBMAP ASCT+B Augmented with RNA-seq Coexpression cell types associated with PAX6 gene from the HuBMAP ASCT+B Augmented with RNA-seq Coexpression dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with PAX6 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with PAX6 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by PAX6 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for PAX6 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of PAX6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of PAX6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of PAX6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
KEA Substrates of Kinases kinases that phosphorylate PAX6 protein from the curated KEA Substrates of Kinases dataset.
KEGG Pathways pathways involving PAX6 protein from the KEGG Pathways dataset.
KEGG Pathways 2026 pathways involving PAX6 protein from the KEGG Pathways 2026 dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PAX6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of PAX6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles cell lines with PAX6 gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of PAX6 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of PAX6 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of PAX6 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PAX6 gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
LOCATE Curated Protein Localization Annotations cellular components containing PAX6 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain PAX6 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by PAX6 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MiRTarBase microRNA Targets microRNAs targeting PAX6 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PAX6 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MPO Gene-Phenotype Associations phenotypes of transgenic mice caused by PAX6 gene mutations from the MPO Gene-Phenotype Associations dataset.
MSigDB Cancer Gene Co-expression Modules co-expressed genes for PAX6 from the MSigDB Cancer Gene Co-expression Modules dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of PAX6 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of PAX6 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
OMIM Gene-Disease Associations phenotypes associated with PAX6 gene from the curated OMIM Gene-Disease Associations dataset.
Pathway Commons Protein-Protein Interactions interacting proteins for PAX6 from the Pathway Commons Protein-Protein Interactions dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PAX6 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of PAX6 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PFOCR Pathway Figure Associations 2023 pathways involving PAX6 protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving PAX6 protein from the Wikipathways PFOCR 2024 dataset.
Phosphosite Textmining Biological Term Annotations biological terms co-occuring with PAX6 protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.
PhosphoSitePlus Substrates of Kinases kinases that phosphorylate PAX6 protein from the curated PhosphoSitePlus Substrates of Kinases dataset.
PID Pathways pathways involving PAX6 protein from the PID Pathways dataset.
Reactome Pathways 2014 pathways involving PAX6 protein from the Reactome Pathways dataset.
Reactome Pathways 2024 pathways involving PAX6 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAX6 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAX6 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAX6 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of PAX6 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PAX6 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PAX6 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PAX6 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with PAX6 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
Tabula Sapiens Gene-Cell Associations cell types with high or low expression of PAX6 gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of PAX6 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TargetScan Predicted Conserved microRNA Targets microRNAs regulating expression of PAX6 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of PAX6 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of PAX6 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores tissues with high expression of PAX6 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PAX6 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of PAX6 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PAX6 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with PAX6 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PAX6 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2014 pathways involving PAX6 protein from the Wikipathways Pathways 2014 dataset.
WikiPathways Pathways 2024 pathways involving PAX6 protein from the WikiPathways Pathways 2024 dataset.