| HGNC Family | Cadherins |
| Name | protocadherin beta 18 pseudogene |
| Description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided collection of abstracts collectively describes cellular detoxification and metabolic regulatory networks. Several studies demonstrate that nuclear receptors—such as PXR, CAR, FXR, and VDR—coordinate the induction of phase I enzymes (e.g., cytochrome P450s), phase II conjugating enzymes (notably sulfotransferases like SULT2A1, SULT2B1), and transporters (e.g., Mrp4) to enhance the clearance of bile acids, steroids, and xenobiotics. These signaling events facilitate the transformation of lipophilic compounds into more hydrophilic metabolites for elimination and are modulated by physiological stresses including inflammation and aging."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn parallel, other studies focus on peroxisomal proteins and their roles in key metabolic processes. For example, the AAA-type ATPase PEX1 (and its partner PEX6) is shown to be critical for the import of peroxisomal resident proteins, and alterations in peroxisome biogenesis and function are linked to tissue-specific defects such as those seen in cardiotoxicity and auditory dysfunction. These reports underscore the importance of peroxisomal dynamics in maintaining cellular metabolic homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, despite the broad examination of regulatory pathways governing xenobiotic metabolism, bile acid detoxification, and peroxisome biogenesis present in these abstracts, none of the reports address or provide functional insights into the gene PCDHB18P. As a member of the protocadherin beta family (inferred from its symbol) and likely representing a pseudogene form, PCDHB18P is not implicated in the metabolic or signaling processes described here. Therefore, its cellular function remains undefined based on the current literature, and further investigation is required to elucidate any potential roles it may have."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}, {"type": "fg_f", "ref": "13"}, {"type": "fg_fs", "start_ref": "7", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Junichiro Sonoda, Wen Xie, John M Rosenfeld, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of a xenobiotic sulfonation cascade by nuclear pregnane X receptor (PXR)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.212494599"}], "href": "https://doi.org/10.1073/pnas.212494599"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12370413"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12370413"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hirotaka Kitada, Masaaki Miyata, Toshifumi Nakamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Protective role of hydroxysteroid sulfotransferase in lithocholic acid-induced liver toxicity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M210634200"}], "href": "https://doi.org/10.1074/jbc.M210634200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12637555"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12637555"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chikara Shimizu, Hirotoshi Fuda, Hidekatsu Yanai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Conservation of the hydroxysteroid sulfotransferase SULT2B1 gene structure in the mouse: pre- and postnatal expression, kinetic analysis of isoforms, and comparison with prototypical SULT2A1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2002-221011"}], "href": "https://doi.org/10.1210/en.2002-221011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12639899"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12639899"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Mahfoud Assem, Erin G Schuetz, Markos Leggas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interactions between hepatic Mrp4 and Sult2a as revealed by the constitutive androstane receptor and Mrp4 knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M314111200"}], "href": "https://doi.org/10.1074/jbc.M314111200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15004017"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15004017"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Min Sun Kim, Judy Shigenaga, Art Moser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Suppression of DHEA sulfotransferase (Sult2A1) during the acute-phase response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Endocrinol Metab (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpendo.00130.2004"}], "href": "https://doi.org/10.1152/ajpendo.00130.2004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15198932"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15198932"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ibtissam Echchgadda, Chung S Song, Tae-Sung Oh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gene regulation for the senescence marker protein DHEA-sulfotransferase by the xenobiotic-activated nuclear pregnane X receptor (PXR)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mech Ageing Dev (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mad.2004.08.008"}], "href": "https://doi.org/10.1016/j.mad.2004.08.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15541768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15541768"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Young-Kyo Seo, Yoon-Tae Chung, Soyoung Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Xenobiotic- and vitamin D-responsive induction of the steroid/bile acid-sulfotransferase Sult2A1 in young and old mice: the role of a gene enhancer in the liver chromatin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2006.10.006"}], "href": "https://doi.org/10.1016/j.gene.2006.10.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17123747"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17123747"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Kathleen G Barrett, Hailin Fang, Mary D Gargano, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of murine hepatic hydroxysteroid sulfotransferase expression in hyposulfatemic mice and in a cell model of 3'-phosphoadenosine-5'-phosphosulfate deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Drug Metab Dispos (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1124/dmd.113.051912"}], "href": "https://doi.org/10.1124/dmd.113.051912"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23674610"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23674610"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Kumiko Shiozawa, Nobuo Maita, Kentaro Tomii, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure of the N-terminal domain of PEX1 AAA-ATPase. 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"}, {"type": "b", "children": [{"type": "t", "text": "Role of opioid receptors in cardioprotection of cold-restraint stress and morphine."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biomed Sci (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/BF02254356"}], "href": "https://doi.org/10.1007/BF02254356"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15591768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15591768"}]}]}]}
|
| Synonyms | PCDHB18, PCDH-PSI2 |
| Proteins | PCDBI_HUMAN |
| NCBI Gene ID | 54660 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PCDHB18P has 1,583 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 33 datasets.
Click the + buttons to view associations for PCDHB18P from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of PCDHB18P gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of PCDHB18P gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of PCDHB18P gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of PCDHB18P gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCDHB18P gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of PCDHB18P gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PCDHB18P gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of PCDHB18P gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing PCDHB18P protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCDHB18P gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with PCDHB18P gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PCDHB18P gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PCDHB18P gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of PCDHB18P gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing PCDHB18P from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing PCDHB18P from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of PCDHB18P gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of PCDHB18P gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of PCDHB18P gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of PCDHB18P gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of PCDHB18P gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PCDHB18P gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of PCDHB18P gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HMDB Metabolites of Enzymes | interacting metabolites for PCDHB18P protein from the curated HMDB Metabolites of Enzymes dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of PCDHB18P gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCDHB18P gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of PCDHB18P gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of PCDHB18P gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of PCDHB18P gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PCDHB18P gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of PCDHB18P gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of PCDHB18P protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of PCDHB18P protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |