PGM5P2 Gene

Name phosphoglucomutase 5 pseudogene 2
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts mention PGM5P2 directly, together they offer a detailed picture of how Ca2+‐sensing proteins—primarily members of the Doc2 family along with synaptotagmins—regulate vesicle exocytosis. These studies describe how the Doc2 isoforms, by virtue of their tandem C2 domains, bind Ca2+ and phospholipids to control various modes of neurotransmitter and hormone release, including spontaneous, asynchronous, and evoked secretion. In particular, one study showed that the polybasic region within Doc2α’s C2B domain is essential for its interaction with the SNARE complex and for maintaining a pool of readily releasable vesicles (PMID 20403080"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", while another highlighted a role for DOC2 proteins in glucose-stimulated insulin secretion in endocrine cells, linking Ca2+ regulation to insulin release (PMID 25005332."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther reports emphasize that individual Ca2+ sensors are differentially specialized in modulating synaptic release depending on the neuronal subtype. For example, differing dependencies on Doc2α versus synaptotagmin-1 were shown to selectively shape spontaneous glutamatergic and inhibitory GABAergic release (PMID 29754754"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "; while detailed mutational analyses further suggested that alterations in the Ca2+-binding properties of Doc2 proteins can mimic a constitutively active state leading to enhanced spontaneous release (PMID 31594980."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, the interplay and non-overlapping functions among Ca2+ sensors have been underscored by studies showing that ablation of one sensor (e.g., synaptotagmin-1) does not necessarily alleviate phenomena driven by Doc2 isoforms, suggesting that these proteins support vesicle fusion by separate mechanisms (PMID 32098902"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "; PMID 33753311."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther investigations have extended the relevance of these Ca2+ sensors to broader aspects of neuronal function and disease. Doc2α deficiency, for example, is associated with alterations in neuronal morphology and social as well as repetitive behavioral deficits, implicating these proteins in neurodevelopmental disorders (PMID 37354460."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Moreover, studies examining synaptic protein interactions revealed that mutations affecting binding partners, such as Munc18-1, can destabilize Doc2 proteins and exacerbate synaptic dysfunction in disease contexts (PMID 38242640."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Finally, dissection of the contributions to asynchronous neurotransmitter release has highlighted a critical role for Doc2α—particularly in its interplay with other Ca2+ sensors—to maintain synaptic vesicle replenishment during repetitive activity (PMID 38536730."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while these abstracts do not address PGM5P2 specifically, they collectively demonstrate that Ca2+-binding proteins like the Doc2 family are pivotal regulators of secretion in both neural and endocrine systems. They act by modulating vesicle docking, priming, and fusion through Ca2+-dependent interactions with phospholipids and key components of the SNARE complex. If PGM5P2 is considered in a similar context, one might speculate that it could share analogous roles in fine-tuning Ca2+-regulated exocytosis; however, no direct evidence is provided in the current literature.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mai Sato, Yasunori Mori, Takahide Matsui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Role of the polybasic sequence in the Doc2alpha C2B domain in dense-core vesicle exocytosis in PC12 cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurochem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1471-4159.2010.06739.x"}], "href": "https://doi.org/10.1111/j.1471-4159.2010.06739.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20403080"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20403080"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jia Li, James Cantley, James G Burchfield, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DOC2 isoforms play dual roles in insulin secretion and insulin-stimulated glucose uptake."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetologia (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00125-014-3312-y"}], "href": "https://doi.org/10.1007/s00125-014-3312-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25005332"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25005332"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Nicholas A Courtney, Joseph S Briguglio, Mazdak M Bradberry, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Excitatory and Inhibitory Neurons Utilize Different Ca"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "2+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " Sensors and Sources to Regulate Spontaneous Release."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2018.04.022"}], "href": "https://doi.org/10.1016/j.neuron.2018.04.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29754754"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29754754"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Quentin Bourgeois-Jaarsma, Matthijs Verhage, Alexander J Groffen "}, {"type": "b", "children": [{"type": "t", "text": "Doc2b Ca"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "2+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " binding site mutants enhance synaptic release at rest at the expense of sustained synaptic strength."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-019-50684-1"}], "href": "https://doi.org/10.1038/s41598-019-50684-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31594980"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31594980"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Rocío Díez-Arazola, Marieke Meijer, Quentin Bourgeois-Jaarsma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Doc2 Proteins Are Not Required for the Increased Spontaneous Release Rate in Synaptotagmin-1-Deficient Neurons."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.0309-19.2020"}], "href": "https://doi.org/10.1523/JNEUROSCI.0309-19.2020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32098902"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32098902"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Quentin Bourgeois-Jaarsma, Pablo Miaja Hernandez, Alexander J Groffen "}, {"type": "b", "children": [{"type": "t", "text": "Ca"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "2+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " sensor proteins in spontaneous release and synaptic plasticity: Limited contribution of Doc2c, rabphilin-3a and synaptotagmin 7 in hippocampal glutamatergic neurons."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Neurosci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mcn.2021.103613"}], "href": "https://doi.org/10.1016/j.mcn.2021.103613"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33753311"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33753311"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Qiu-Wen Wang, Junhong Qin, Yan-Fen Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "16p11.2 CNV gene Doc2α functions in neurodevelopment and social behaviors through interaction with Secretagogin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2023.112691"}], "href": "https://doi.org/10.1016/j.celrep.2023.112691"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37354460"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37354460"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Noah Guy Lewis Guiberson, Luca S Black, Jillian E Haller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Disease-linked mutations in Munc18-1 deplete synaptic Doc2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awae019"}], "href": "https://doi.org/10.1093/brain/awae019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38242640"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38242640"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zhenyong Wu, Grant F Kusick, Manon M M Berns, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Synaptotagmin 7 docks synaptic vesicles to support facilitation and Doc2α-triggered asynchronous release."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.90632"}], "href": "https://doi.org/10.7554/eLife.90632"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38536730"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38536730"}]}]}]}
NCBI Gene ID 595135
API
Download Associations
Predicted Functions View PGM5P2's ARCHS4 Predicted Functions.
Co-expressed Genes View PGM5P2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PGM5P2's ARCHS4 Predicted Functions.

Functional Associations

PGM5P2 has 1,266 functional associations with biological entities spanning 5 categories (molecular profile, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for PGM5P2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PGM5P2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with PGM5P2 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PGM5P2 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of PGM5P2 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PGM5P2 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PGM5P2 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PGM5P2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of PGM5P2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PGM5P2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PGM5P2 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of PGM5P2 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PGM5P2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PGM5P2 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with PGM5P2 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with PGM5P2 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of PGM5P2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PGM5P2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of PGM5P2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of PGM5P2 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PGM5P2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of PGM5P2 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.