PLPP7 Gene

Name phospholipid phosphatase 7 (inactive)
Description Predicted to enable sphingosine-1-phosphate phosphatase activity. Predicted to act upstream of or within negative regulation of myotube differentiation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be active in membrane and nuclear envelope. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPLPP7, also known as NET39 or Ppapdc3, is a nuclear envelope transmembrane protein that plays a critical role in muscle cell differentiation. Studies have demonstrated that high expression of PLPP7 in cardiac and skeletal muscle is associated with myoblast differentiation, where its increased levels correlate with the repression of differentiation. Mechanistically, PLPP7 interacts with mTOR to attenuate mTOR signaling, leading to reduced insulin‐like growth factor II production and dampened autocrine signals—a cascade that ultimately delays myogenesis. (See"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ")\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn vivo evidence further underscores the functional importance of PLPP7 in muscle physiology. Mice deficient in PLPP7 exhibit severe myopathy accompanied by disruptions in nuclear integrity, altered chromatin accessibility, and aberrant gene expression, ultimately culminating in juvenile lethality. These phenotypic alterations parallel the features observed in Emery-Dreifuss muscular dystrophy (EDMD) cases, suggesting that PLPP7 contributes to the maintenance of nuclear envelope structure and chromatin organization in muscle tissue. (See"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ")\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTogether, these studies indicate that PLPP7 is a multifunctional regulator within muscle cells, crucial not only for modulating mTOR-driven differentiation signals but also for preserving nuclear and chromatin architecture essential for muscle homeostasis. The dual roles of PLPP7 in both signaling and structural maintenance highlight its significance in normal muscle physiology and its potential contribution to the molecular etiology of muscular dystrophies. (See"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ")\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Guang-Hui Liu, Tinglu Guan, Kaustuv Datta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of myoblast differentiation by the nuclear envelope protein NET39."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00684-09"}], "href": "https://doi.org/10.1128/MCB.00684-09"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19704009"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19704009"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Andres Ramirez-Martinez, Yichi Zhang, Kenian Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The nuclear envelope protein Net39 is essential for muscle nuclear integrity and chromatin organization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-021-20987-x"}], "href": "https://doi.org/10.1038/s41467-021-20987-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33514739"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33514739"}]}]}]}
NCBI Gene ID 84814
API
Download Associations
Predicted Functions View PLPP7's ARCHS4 Predicted Functions.
Co-expressed Genes View PLPP7's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PLPP7's ARCHS4 Predicted Functions.

Functional Associations

PLPP7 has 784 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 17 datasets.

Click the + buttons to view associations for PLPP7 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PLPP7 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of PLPP7 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing PLPP7 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PLPP7 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with PLPP7 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PLPP7 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by PLPP7 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of PLPP7 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of PLPP7 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with PLPP7 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of PLPP7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of PLPP7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of PLPP7 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PLPP7 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PLPP7 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PLPP7 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PLPP7 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.