PNPT1 Gene

Name polyribonucleotide nucleotidyltransferase 1
Description The protein encoded by this gene belongs to the evolutionary conserved polynucleotide phosphorylase family comprised of phosphate dependent 3'-to-5' exoribonucleases implicated in RNA processing and degradation. This enzyme is predominantly localized in the mitochondrial intermembrane space and is involved in import of RNA to mitochondria. Mutations in this gene have been associated with combined oxidative phosphorylation deficiency-13 and autosomal recessive nonsyndromic deafness-70. Related pseudogenes are found on chromosomes 3 and 7. [provided by RefSeq, Dec 2012]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nHuman PNPT1 encodes the mitochondrial polynucleotide phosphorylase (PNPase), a conserved 3′→5′ exoribonuclease that plays a central role in mitochondrial RNA metabolism. Rather than residing in the mitochondrial matrix, endogenous PNPase is uniquely localized to the intermembrane space where it regulates the import of select nuclear‐encoded RNAs into the matrix and modulates their processing – including polyadenylation and maturation. In this capacity, PNPase participates in the assembly of an RNA‐degrading “degradosome” (in association with the helicase hSuv3) that safeguards RNA quality control and proper turnover. Disruption of its structural integrity, for example by mutations compromising trimerization, perturbs RNA binding and leads to accumulation of RNA processing intermediates, collectively impairing mitochondrial transcript maturation and respiratory function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nApart from its mitochondrial RNA‐handling roles, PNPase is tightly linked to the regulation of cellular homeostasis. Its expression is inducible by type I interferons, and elevated PNPase activity has been shown to selectively degrade oncogenic mRNAs (for example, c‐myc) and key microRNAs (such as miR-221), thereby triggering G1 cell cycle arrest, senescence, and apoptosis in diverse cell types including melanoma cells. These findings implicate PNPase as an important mediator of interferon action and a negative regulator of cell proliferation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMutations or dysregulation of PNPT1 have been increasingly associated with a spectrum of human diseases. Defective PNPase activity—whether due to impaired trimerization, aberrant RNA‐binding, or misregulated transcription driven by promoter elements (involving factors such as SP1 and NFY) and metabolic cues (for example, citrate)—can result in diverse clinical phenotypes. These include mitochondrial respiratory chain deficiencies manifesting as sensorineural hearing loss, Leigh syndrome, neurodegenerative disorders such as spinocerebellar ataxia, and even metabolic disturbances including fatty liver disease; in some studies, associations with altered noncoding SNPs have even been linked to drug-induced side effects. Collectively, these observations underscore the multifaceted role of PNPase in mitochondrial homeostasis, RNA surveillance, and broader cellular regulatory pathways, highlighting its potential as a therapeutic target in both neoplastic and mitochondrial disorders."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "35"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Robert N Rainey, Jenny D Glavin, Hsiao-Wen Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A new function in translocation for the mitochondrial i-AAA protease Yme1: import of polynucleotide phosphorylase into the intermembrane space."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01006-06"}], "href": "https://doi.org/10.1128/MCB.01006-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16966379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16966379"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Victoria Portnoy, Gili Palnizky, Shlomit Yehudai-Resheff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of the human polynucleotide phosphorylase (PNPase) reveals differences in RNA binding and response to phosphate compared to its bacterial and chloroplast counterparts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.698108"}], "href": "https://doi.org/10.1261/rna.698108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18083836"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18083836"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shimyn Slomovic, Gadi Schuster "}, {"type": "b", "children": [{"type": "t", "text": "Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.697308"}], "href": "https://doi.org/10.1261/rna.697308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18083837"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18083837"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Dennis Ding-Hwa Wang, Zhanyong Shu, Scot A Lieser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human mitochondrial SUV3 and polynucleotide phosphorylase form a 330-kDa heteropentamer to cooperatively degrade double-stranded RNA with a 3'-to-5' directionality."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.009605"}], "href": "https://doi.org/10.1074/jbc.M109.009605"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19509288"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19509288"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Geng Wang, Hsiao-Wen Chen, Yavuz Oktay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PNPASE regulates RNA import into mitochondria."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2010.06.035"}], "href": "https://doi.org/10.1016/j.cell.2010.06.035"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20691904"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20691904"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Simon von Ameln, Geng Wang, Redouane Boulouiz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A mutation in PNPT1, encoding mitochondrial-RNA-import protein PNPase, causes hereditary hearing loss."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2012.09.002"}], "href": "https://doi.org/10.1016/j.ajhg.2012.09.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23084290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23084290"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Vanessa Vedrenne, Ali Gowher, Pascale De Lonlay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutation in PNPT1, which encodes a polyribonucleotide nucleotidyltransferase, impairs RNA import into mitochondria and causes respiratory-chain deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2012.09.001"}], "href": "https://doi.org/10.1016/j.ajhg.2012.09.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23084291"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23084291"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Lukasz S Borowski, Andrzej Dziembowski, Monika S Hejnowicz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gks1130"}], "href": "https://doi.org/10.1093/nar/gks1130"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23221631"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23221631"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Bagher Golzarroshan, Chia-Liang Lin, Chia-Lung Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystal structure of dimeric human PNPase reveals why disease-linked mutants suffer from low RNA import and degradation activities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gky642"}], "href": "https://doi.org/10.1093/nar/gky642"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30020492"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30020492"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Magdalena Leszczyniecka, Dong-Chul Kang, Devanand Sarkar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.252643699"}], "href": "https://doi.org/10.1073/pnas.252643699"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12473748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12473748"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Devanand Sarkar, Magdalena Leszczyniecka, Dong-chul Kang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Down-regulation of Myc as a potential target for growth arrest induced by human polynucleotide phosphorylase (hPNPaseold-35) in human melanoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M302421200"}], "href": "https://doi.org/10.1074/jbc.M302421200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12721301"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12721301"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Jan Piwowarski, Pawel Grzechnik, Andrzej Dziembowski, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human polynucleotide phosphorylase, hPNPase, is localized in mitochondria."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0022-2836(03)00528-x"}], "href": "https://doi.org/10.1016/s0022-2836(03"}, {"type": "t", "text": "00528-x) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12798676"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12798676"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "D Sarkar, E S Park, P B Fisher "}, {"type": "b", "children": [{"type": "t", "text": "Defining the mechanism by which IFN-beta dowregulates c-myc expression in human melanoma cells: pivotal role for human polynucleotide phosphorylase (hPNPaseold-35)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Differ (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.cdd.4401829"}], "href": "https://doi.org/10.1038/sj.cdd.4401829"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16410805"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16410805"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Hsiao-Wen Chen, Robert N Rainey, Cynthia E Balatoni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian polynucleotide phosphorylase is an intermembrane space RNase that maintains mitochondrial homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01002-06"}], "href": "https://doi.org/10.1128/MCB.01002-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16966381"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16966381"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Devanand Sarkar, Eun Sook Park, Glen N Barber, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Activation of double-stranded RNA dependent protein kinase, a new pathway by which human polynucleotide phosphorylase (hPNPase(old-35)) induces apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-07-0872"}], "href": "https://doi.org/10.1158/0008-5472.CAN-07-0872"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17804700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17804700"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Hsiao-Wen Chen, Carla M Koehler, Michael A Teitell "}, {"type": "b", "children": [{"type": "t", "text": "Human polynucleotide phosphorylase: location matters."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Trends Cell Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.tcb.2007.09.006"}], "href": "https://doi.org/10.1016/j.tcb.2007.09.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17983748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17983748"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Swadesh K Das, Upneet K Sokhi, Sujit K Bhutia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human polynucleotide phosphorylase selectively and preferentially degrades microRNA-221 in human melanoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0914143107"}], "href": "https://doi.org/10.1073/pnas.0914143107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20547861"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20547861"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Upneet K Sokhi, Manny D Bacolod, Santanu Dasgupta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of genes potentially regulated by human polynucleotide phosphorylase (hPNPase old-35) using melanoma as a model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0076284"}], "href": "https://doi.org/10.1371/journal.pone.0076284"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24143183"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24143183"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Reinout Raijmakers, Wilma Vree Egberts, Walther J van Venrooij, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0022-2836(02)00947-6"}], "href": "https://doi.org/10.1016/s0022-2836(02"}, {"type": "t", "text": "00947-6) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12419256"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12419256"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Devanand Sarkar, Eun Sook Park, Luni Emdad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Defining the domains of human polynucleotide phosphorylase (hPNPaseOLD-35) mediating cellular senescence."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.16.7333-7343.2005"}], "href": "https://doi.org/10.1128/MCB.25.16.7333-7343.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16055741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16055741"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Chia Liang Lin, Yi-Ting Wang, Wei-Zen Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystal structure of human polynucleotide phosphorylase: insights into its domain function in RNA binding and degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkr1281"}], "href": "https://doi.org/10.1093/nar/gkr1281"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22210891"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22210891"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Yung-Luen Yu, Ruey-Hwang Chou, Chia-Han Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nuclear EGFR suppresses ribonuclease activity of polynucleotide phosphorylase through DNAPK-mediated phosphorylation at serine 776."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.358077"}], "href": "https://doi.org/10.1074/jbc.M112.358077"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22815474"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22815474"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Upneet K Sokhi, Manny D Bacolod, Luni Emdad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of global changes in gene expression induced by human polynucleotide phosphorylase (hPNPase(old-35))."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.24645"}], "href": "https://doi.org/10.1002/jcp.24645"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24729470"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24729470"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Carlanne M Stone, Louise E Butt, Joshua C Bufton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkx114"}], "href": "https://doi.org/10.1093/nar/gkx114"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28334892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28334892"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Sanna Matilainen, Christopher J Carroll, Uwe Richter, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Defective mitochondrial RNA processing due to PNPT1 variants causes Leigh syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddx221"}], "href": "https://doi.org/10.1093/hmg/ddx221"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28645153"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28645153"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Alison Eaton, Francois P Bernier, Caitlin Goedhart, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Is PNPT1-related hearing loss ever non-syndromic? Whole exome sequencing of adult siblings expands the natural history of PNPT1-related disorders."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.40516"}], "href": "https://doi.org/10.1002/ajmg.a.40516"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30244537"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30244537"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Guangyan Mu, Qian Xiang, Zhuo Zhang, et al. "}, {"type": "b", "children": [{"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "PNPT1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " and "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "PCGF3"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " variants associated with angiotensin-converting enzyme inhibitor-induced cough: a nested case-control genome-wide study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pharmacogenomics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2217/pgs-2019-0167"}], "href": "https://doi.org/10.2217/pgs-2019-0167"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32397904"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32397904"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Alessandra Pennisi, Agnès Rötig, Charles-Joris Roux, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Heterogeneity of PNPT1 neuroimaging: mitochondriopathy, interferonopathy or both?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Med Genet (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/jmedgenet-2020-107367"}], "href": "https://doi.org/10.1136/jmedgenet-2020-107367"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33199448"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33199448"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Ali Hosseini Bereshneh, Zahra Rezaei, Ehsan Jafarinia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystallographic modeling of the PNPT1:c.1453A>G variant as a cause of mitochondrial dysfunction and autosomal recessive deafness; expanding the neuroimaging and clinical features."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mitochondrion (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mito.2021.03.012"}], "href": "https://doi.org/10.1016/j.mito.2021.03.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33812062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33812062"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "Paridhy Vanniya S, Jayasankaran Chandru, Justin Margret Jeffrey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PNPT1, MYO15A, PTPRQ, and SLC12A2-associated genetic and phenotypic heterogeneity among hearing impaired assortative mating families in Southern India."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Hum Genet (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/ahg.12442"}], "href": "https://doi.org/10.1111/ahg.12442"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34374074"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34374074"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Federica A Falchi, Roberto Pizzoccheri, Federica Briani "}, {"type": "b", "children": [{"type": "t", "text": "Activity and Function in Human Cells of the Evolutionary Conserved Exonuclease Polynucleotide Phosphorylase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms23031652"}], "href": "https://doi.org/10.3390/ijms23031652"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35163574"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35163574"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Mathieu Barbier, Melanie Bahlo, Alessandra Pennisi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Heterozygous PNPT1 Variants Cause Spinocerebellar Ataxia Type 25."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.26366"}], "href": "https://doi.org/10.1002/ana.26366"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35411967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35411967"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Ignacio Ventura, Fernando Revert, Francisco Revert-Ros, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SP1 and NFY Regulate the Expression of "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "PNPT1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": ", a Gene Encoding a Mitochondrial Protein Involved in Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms231911399"}], "href": "https://doi.org/10.3390/ijms231911399"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36232701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36232701"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "Federica A Falchi, Francesca Forti, Cristina Carnelli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human PNPase causes RNA stabilization and accumulation of R-loops in the Escherichia coli model system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-023-38924-x"}], "href": "https://doi.org/10.1038/s41598-023-38924-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37479726"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37479726"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Canghai Guan, Xinlei Zou, Chengru Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Polyribonucleotide nucleotidyltransferase 1 participates in metabolic-associated fatty liver disease pathogenesis by affecting lipid metabolism and mitochondrial homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Metab (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molmet.2024.102022"}], "href": "https://doi.org/10.1016/j.molmet.2024.102022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39218215"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39218215"}]}]}]}
Synonyms OLD35, DFNB70, COXPD13, OLD-35, PNPASE
Proteins PNPT1_HUMAN
NCBI Gene ID 87178
API
Download Associations
Predicted Functions View PNPT1's ARCHS4 Predicted Functions.
Co-expressed Genes View PNPT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PNPT1's ARCHS4 Predicted Functions.

Functional Associations

PNPT1 has 7,170 functional associations with biological entities spanning 9 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 123 datasets.

Click the + buttons to view associations for PNPT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Achilles Cell Line Gene Essentiality Profiles cell lines with fitness changed by PNPT1 gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset.
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PNPT1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles tissues with high or low expression of PNPT1 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PNPT1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of PNPT1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of PNPT1 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PNPT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of PNPT1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with PNPT1 protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with PNPT1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PNPT1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of PNPT1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of PNPT1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations phenotypes associated with PNPT1 gene from the curated ClinVar Gene-Phenotype Associations dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with PNPT1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing PNPT1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing PNPT1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing PNPT1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores cellular components containing PNPT1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing PNPT1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores cellular components co-occuring with PNPT1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PNPT1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with PNPT1 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
CTD Gene-Disease Associations diseases associated with PNPT1 gene/protein from the curated CTD Gene-Disease Associations dataset.
dbGAP Gene-Trait Associations traits associated with PNPT1 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of PNPT1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DISEASES Curated Gene-Disease Association Evidence Scores diseases involving PNPT1 gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving PNPT1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with PNPT1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with PNPT1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PNPT1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with PNPT1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with PNPT1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PNPT1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PNPT1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of PNPT1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing PNPT1 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GAD Gene-Disease Associations diseases associated with PNPT1 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with PNPT1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing PNPT1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of PNPT1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2015 biological processes involving PNPT1 gene from the curated GO Biological Process Annotations 2015 dataset.
GO Biological Process Annotations 2023 biological processes involving PNPT1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving PNPT1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2015 cellular components containing PNPT1 protein from the curated GO Cellular Component Annotations 2015 dataset.
GO Cellular Component Annotations 2023 cellular components containing PNPT1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing PNPT1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2015 molecular functions performed by PNPT1 gene from the curated GO Molecular Function Annotations 2015 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by PNPT1 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by PNPT1 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of PNPT1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PNPT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of PNPT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with PNPT1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
GWASdb SNP-Disease Associations diseases associated with PNPT1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with PNPT1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of PNPT1 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
HMDB Metabolites of Enzymes interacting metabolites for PNPT1 protein from the curated HMDB Metabolites of Enzymes dataset.
HPA Cell Line Gene Expression Profiles cell lines with high or low expression of PNPT1 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of PNPT1 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of PNPT1 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
HPO Gene-Disease Associations phenotypes associated with PNPT1 gene by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset.
Hub Proteins Protein-Protein Interactions interacting hub proteins for PNPT1 from the curated Hub Proteins Protein-Protein Interactions dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with PNPT1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for PNPT1 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of PNPT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of PNPT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of PNPT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
KEGG Pathways pathways involving PNPT1 protein from the KEGG Pathways dataset.
KEGG Pathways 2026 pathways involving PNPT1 protein from the KEGG Pathways 2026 dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PNPT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of PNPT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles cell lines with PNPT1 gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of PNPT1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain PNPT1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by PNPT1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MiRTarBase microRNA Targets microRNAs targeting PNPT1 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PNPT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MPO Gene-Phenotype Associations phenotypes of transgenic mice caused by PNPT1 gene mutations from the MPO Gene-Phenotype Associations dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of PNPT1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
NURSA Protein Complexes protein complexs containing PNPT1 protein recovered by IP-MS from the NURSA Protein Complexes dataset.
OMIM Gene-Disease Associations phenotypes associated with PNPT1 gene from the curated OMIM Gene-Disease Associations dataset.
Pathway Commons Protein-Protein Interactions interacting proteins for PNPT1 from the Pathway Commons Protein-Protein Interactions dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PNPT1 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations gene perturbations changing expression of PNPT1 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
PFOCR Pathway Figure Associations 2023 pathways involving PNPT1 protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving PNPT1 protein from the Wikipathways PFOCR 2024 dataset.
Phosphosite Textmining Biological Term Annotations biological terms co-occuring with PNPT1 protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.
PhosphoSitePlus Substrates of Kinases kinases that phosphorylate PNPT1 protein from the curated PhosphoSitePlus Substrates of Kinases dataset.
ProteomicsDB Cell Type and Tissue Protein Expression Profiles cell types and tissues with high or low expression of PNPT1 protein relative to other cell types and tissues from the ProteomicsDB Cell Type and Tissue Protein Expression Profiles dataset.
Reactome Pathways 2024 pathways involving PNPT1 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PNPT1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PNPT1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PNPT1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of PNPT1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Cell and Tissue Gene Expression Profiles cell types and tissues with high or low expression of PNPT1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PNPT1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PNPT1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PNPT1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with PNPT1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of PNPT1 gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of PNPT1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TargetScan Predicted Conserved microRNA Targets microRNAs regulating expression of PNPT1 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of PNPT1 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of PNPT1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores tissues with high expression of PNPT1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PNPT1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of PNPT1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PNPT1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with PNPT1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PNPT1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2014 pathways involving PNPT1 protein from the Wikipathways Pathways 2014 dataset.
WikiPathways Pathways 2024 pathways involving PNPT1 protein from the WikiPathways Pathways 2024 dataset.