PPP4R3A Gene

Name protein phosphatase 4 regulatory subunit 3A
Description Predicted to enable protein phosphatase activator activity. Predicted to be involved in DNA damage response and regulation of double-strand break repair. Predicted to act upstream of or within positive regulation of gluconeogenesis and protein dephosphorylation. Located in cytosol and nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPPP4R3A, also known as sMEK1, functions as a key regulatory subunit of protein phosphatase 4 that modulates several critical signaling networks. Its activity has been shown to mediate anti-angiogenic and pro-apoptotic effects in tumor cells by interfering with VEGF‐stimulated pathways—attenuating cell proliferation, migration, and capillary‐like network formation—and by directly interacting with tumor suppressors such as BLU to enhance sMEK1 expression and trigger cell death."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nDiverse studies further implicate PPP4R3A in the regulation of oncogenic processes. By binding to proteins such as BMI-1, it counteracts oncogene-driven cellular proliferation and survival, modulating the expression of key cell cycle regulators and apoptosis mediators. In leukemic T cells, for instance, overexpression of PPP4R3A diminishes cell growth and colony formation through impacts on multiple signaling axes including MAPK, AKT, JAK/STAT, NFκB, and TGFβ, while forceful downregulation enhances cell survival. Moreover, PPP4R3A has been shown to attenuate the unfolded protein response by inhibiting IRE1 activation and its downstream effectors, hence preserving cellular homeostasis under endoplasmic reticulum stress."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n \nAlthough not directly examined in the context of PPP4R3A function, genetic studies using declines in glucose metabolism as a proxy for Alzheimer’s disease progression highlight the broader significance of regulatory phosphatases in cellular energy balance and stress responses. These findings, when considered alongside its established roles in apoptosis and angiogenesis, suggest that PPP4R3A may also have potential implications in neurodegenerative conditions, warranting further exploration of its genetic variants and functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Seung Myung Dong, Hyun-Jung Byun, Boh-Ram Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor suppressor BLU enhances pro-apoptotic activity of sMEK1 through physical interaction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Signal (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellsig.2012.02.002"}], "href": "https://doi.org/10.1016/j.cellsig.2012.02.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22349239"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22349239"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Boh-Ram Kim, Seung Hee Seo, Mi Sun Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "sMEK1 inhibits endothelial cell proliferation by attenuating VEGFR-2-dependent-Akt/eNOS/HIF-1α signaling pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.5570"}], "href": "https://doi.org/10.18632/oncotarget.5570"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26378810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26378810"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Boh-Ram Kim, Youngjoo Kwon, Seung Bae Rho "}, {"type": "b", "children": [{"type": "t", "text": "BMI-1 interacts with sMEK1 and inactivates sMEK1-induced apoptotic cell death."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2016.5262"}], "href": "https://doi.org/10.3892/or.2016.5262"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27878292"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27878292"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Nadieh Kavousi, Daniel P Tonge, Mirna Mourtada-Maarabouni "}, {"type": "b", "children": [{"type": "t", "text": "New insights into the functional role of protein phosphatase 4 regulatory subunit PP4R3A/SMEK1 in the regulation of leukemic cell fate."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Macromol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ijbiomac.2023.123467"}], "href": "https://doi.org/10.1016/j.ijbiomac.2023.123467"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36731689"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36731689"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ozaira Qadri, Samirul Bashir, Mariam Banday, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumour suppressor protein sMEK1 links to IRE1 signalling pathway to modulate its activity during ER stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Cell Res (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbamcr.2024.119774"}], "href": "https://doi.org/10.1016/j.bbamcr.2024.119774"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38838857"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38838857"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Leigh Christopher, Valerio Napolioni, Raiyan R Khan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A variant in PPP4R3A protects against alzheimer-related metabolic decline."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.25094"}], "href": "https://doi.org/10.1002/ana.25094"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29130521"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29130521"}]}]}]}
NCBI Gene ID 55671
API
Download Associations
Predicted Functions View PPP4R3A's ARCHS4 Predicted Functions.
Co-expressed Genes View PPP4R3A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PPP4R3A's ARCHS4 Predicted Functions.

Functional Associations

PPP4R3A has 2,990 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 44 datasets.

Click the + buttons to view associations for PPP4R3A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PPP4R3A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of PPP4R3A gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with PPP4R3A protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with PPP4R3A gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of PPP4R3A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of PPP4R3A gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing PPP4R3A protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing PPP4R3A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing PPP4R3A protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PPP4R3A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by PPP4R3A gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with PPP4R3A gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PPP4R3A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with PPP4R3A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with PPP4R3A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving PPP4R3A gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving PPP4R3A gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing PPP4R3A protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing PPP4R3A protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by PPP4R3A gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by PPP4R3A gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of PPP4R3A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of PPP4R3A gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with PPP4R3A gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of PPP4R3A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of PPP4R3A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving PPP4R3A protein from the KEGG Pathways 2026 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of PPP4R3A gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of PPP4R3A gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of PPP4R3A gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of PPP4R3A gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2024 pathways involving PPP4R3A protein from the Wikipathways PFOCR 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PPP4R3A gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PPP4R3A gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PPP4R3A gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of PPP4R3A gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PPP4R3A gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PPP4R3A gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of PPP4R3A gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of PPP4R3A gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PPP4R3A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PPP4R3A protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PPP4R3A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving PPP4R3A protein from the WikiPathways Pathways 2024 dataset.