| HGNC Family | PRAME family (PRAMEF) |
| Name | PRAME family member 9 |
| Description | Enables ubiquitin-like ligase-substrate adaptor activity. Involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Is active in Cul2-RING ubiquitin ligase complex. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided literature does not mention PRAMEF9, the collective data instead reveal that ATRX is a multifunctional chromatin‐remodeling protein that plays a central role in establishing and maintaining specialized chromatin domains. ATRX acts as an H3.3‐specific chaperone by partnering with DAXX to promote replication‐independent nucleosome assembly at heterochromatic regions—including telomeres, pericentromeric domains, and imprinted loci—thereby ensuring proper deposition of histone marks (e.g., H3K9me3) and the suppression of repetitive elements. Its affinity for variant DNA structures such as G-quadruplexes further underpins chromatin stability during S-phase and transcriptional elongation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its core chromatin‐regulatory functions, ATRX is crucial for proper cellular differentiation and organismal development. In neural progenitors and maturing neurons, ATRX promotes synaptic organization and survival while safeguarding genome integrity; its deficiency leads to replication stress, mitotic defects, and increased apoptosis that are thought to underlie the cognitive deficits, microcephaly, and other phenotypes observed in ATR-X syndrome. Similar requirements for ATRX have been demonstrated in germ cells, forebrain and mesenchymal tissues, where its role in centromere stability and chromosome alignment is essential for normal meiotic progression, limb formation, and endocrine function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "30"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, loss or mutation of ATRX is closely linked to genomic instability and tumorigenesis. Disruption of ATRX compromises DNA repair pathways—particularly the resolution of telomeric double-stranded breaks—and diminishes proper telomere cohesion, thereby increasing susceptibility to replication stress and DNA-damaging agents. Such deficiencies have been observed in diverse cancer models, where ATRX loss correlates with an elevated mutation rate and a distinct therapeutic response, highlighting its potential as a target for tailored oncologic therapies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "31", "end_ref": "37"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while these abstracts do not address PRAMEF9, they collectively underscore ATRX’s pivotal functions in chromatin remodeling, epigenetic maintenance, developmental gene regulation, and genome integrity. This multifaceted role of ATRX is central to normal development and is disrupted in a number of human disorders and cancers.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rabindranath De La Fuente, Maria M Viveiros, Karen Wigglesworth, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATRX, a member of the SNF2 family of helicase/ATPases, is required for chromosome alignment and meiotic spindle organization in metaphase II stage mouse oocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2003.12.012"}], "href": "https://doi.org/10.1016/j.ydbio.2003.12.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15242786"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15242786"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Alexander M Ishov, Olga V Vladimirova, Gerd G Maul "}, {"type": "b", "children": [{"type": "t", "text": "Heterochromatin and ND10 are cell-cycle regulated and phosphorylation-dependent alternate nuclear sites of the transcription repressor Daxx and SWI/SNF protein ATRX."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.01230"}], "href": "https://doi.org/10.1242/jcs.01230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15252119"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15252119"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Odile Gayet, Vincenzo Labella, Christopher E Henderson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The b1 isoform of protocadherin-gamma (Pcdhgamma) interacts with the microtubule-destabilizing protein SCG10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.febslet.2004.10.096"}], "href": "https://doi.org/10.1016/j.febslet.2004.10.096"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15581637"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15581637"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Nathalie G Bérubé, Marie Mangelsdorf, Magdalena Jagla, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The chromatin-remodeling protein ATRX is critical for neuronal survival during corticogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI22329"}], "href": "https://doi.org/10.1172/JCI22329"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15668733"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15668733"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Peter W Lewis, Simon J Elsaesser, Kyung-Min Noh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1008850107"}], "href": "https://doi.org/10.1073/pnas.1008850107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20651253"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20651253"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Arunkumar Dhayalan, Raluca Tamas, Ina Bock, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddr107"}], "href": "https://doi.org/10.1093/hmg/ddr107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21421568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21421568"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Rabindranath De La Fuente, Claudia Baumann, Maria M Viveiros "}, {"type": "b", "children": [{"type": "t", "text": "Chromatin structure and ATRX function in mouse oocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Results Probl Cell Differ (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/978-3-642-30406-4_3"}], "href": "https://doi.org/10.1007/978-3-642-30406-4_3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22918800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22918800"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Michael A Levy, Kristin D Kernohan, Yan Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATRX promotes gene expression by facilitating transcriptional elongation through guanine-rich coding regions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddu596"}], "href": "https://doi.org/10.1093/hmg/ddu596"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25452430"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25452430"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Hsiao P J Voon, Jim R Hughes, Christina Rode, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATRX Plays a Key Role in Maintaining Silencing at Interstitial Heterochromatic Loci and Imprinted Genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2015.03.036"}], "href": "https://doi.org/10.1016/j.celrep.2015.03.036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25865896"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25865896"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Quanyuan He, Hyeung Kim, Rui Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Daxx/Atrx Complex Protects Tandem Repetitive Elements during DNA Hypomethylation by Promoting H3K9 Trimethylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2015.07.022"}], "href": "https://doi.org/10.1016/j.stem.2015.07.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26340527"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26340527"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TERRA RNA Antagonizes ATRX and Protects Telomeres."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2017.06.017"}], "href": "https://doi.org/10.1016/j.cell.2017.06.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28666128"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28666128"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Wenqing Ren, Nicole Medeiros, Robert Warneford-Thomson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-020-15902-9"}], "href": "https://doi.org/10.1038/s41467-020-15902-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32376827"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32376827"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Husam Babikir, Lin Wang, Karin Shamardani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13059-021-02535-4"}], "href": "https://doi.org/10.1186/s13059-021-02535-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34763709"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34763709"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "David Garrick, Jackie A Sharpe, Ruth Arkell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Atrx affects trophoblast development and the pattern of X-inactivation in extraembryonic tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.0020058"}], "href": "https://doi.org/10.1371/journal.pgen.0020058"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16628246"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16628246"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Xinsheng Nan, Jianghui Hou, Alan Maclean, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interaction between chromatin proteins MECP2 and ATRX is disrupted by mutations that cause inherited mental retardation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0608056104"}], "href": "https://doi.org/10.1073/pnas.0608056104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17296936"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17296936"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Mary R Muers, Jacqueline A Sharpe, David Garrick, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Defining the cause of skewed X-chromosome inactivation in X-linked mental retardation by use of a mouse model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/518369"}], "href": "https://doi.org/10.1086/518369"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17503331"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17503331"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Kieran Ritchie, Claudia Seah, Jana Moulin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of ATRX leads to chromosome cohesion and congression defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200706083"}], "href": "https://doi.org/10.1083/jcb.200706083"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18227278"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18227278"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Claudia Baumann, Anja Schmidtmann, Kathrin Muegge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of ATRX with pericentric heterochromatin and the Y chromosome of neonatal mouse spermatogonia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Mol Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2199-9-29"}], "href": "https://doi.org/10.1186/1471-2199-9-29"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18366812"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18366812"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Michael A Levy, Andrew D Fernandes, Deanna C Tremblay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The SWI/SNF protein ATRX co-regulates pseudoautosomal genes that have translocated to autosomes in the mouse genome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2164-9-468"}], "href": "https://doi.org/10.1186/1471-2164-9-468"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18842153"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18842153"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Claudia Baumann, Rabindranath De La Fuente "}, {"type": "b", "children": [{"type": "t", "text": "ATRX marks the inactive X chromosome (Xi) in somatic cells and during imprinted X chromosome inactivation in trophoblast stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chromosoma (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00412-008-0189-x"}], "href": "https://doi.org/10.1007/s00412-008-0189-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19005673"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19005673"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Chantal F Medina, Chantal Mazerolle, Yaping Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Altered visual function and interneuron survival in Atrx knockout mice: inference for the human syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddn424"}], "href": "https://doi.org/10.1093/hmg/ddn424"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19088125"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19088125"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Lauren A Solomon, Jennifer R Li, Nathalie G Bérubé, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of ATRX in chondrocytes has minimal effects on skeletal development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0007106"}], "href": "https://doi.org/10.1371/journal.pone.0007106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19774083"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19774083"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Tatsuya Nogami, Hideyuki Beppu, Takashi Tokoro, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced expression of the ATRX gene, a chromatin-remodeling factor, causes hippocampal dysfunction in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hippocampus (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/hipo.20782"}], "href": "https://doi.org/10.1002/hipo.20782"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20865721"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20865721"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Claudia Baumann, Maria M Viveiros, Rabindranath De La Fuente "}, {"type": "b", "children": [{"type": "t", "text": "Loss of maternal ATRX results in centromere instability and aneuploidy in the mammalian oocyte and pre-implantation embryo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1001137"}], "href": "https://doi.org/10.1371/journal.pgen.1001137"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20885787"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20885787"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Martin J Law, Karen M Lower, Hsiao P J Voon, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2010.09.023"}], "href": "https://doi.org/10.1016/j.cell.2010.09.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21029860"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21029860"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Damiano Conte, Michael Huh, Emma Goodall, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Atrx sensitizes cells to DNA damaging agents through p53-mediated death pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0052167"}], "href": "https://doi.org/10.1371/journal.pone.0052167"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23284920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23284920"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Renee J Tamming, Jennifer R Siu, Yan Jiang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Atrx deletion impairs CGAS/STING signaling and increases sarcoma response to radiation and oncolytic herpesvirus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI149310"}], "href": "https://doi.org/10.1172/JCI149310"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37200088"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37200088"}]}]}]}
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| Proteins | PRAM9_HUMAN |
| NCBI Gene ID | 343070 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PRAMEF9 has 593 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 33 datasets.
Click the + buttons to view associations for PRAMEF9 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PRAMEF9 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of PRAMEF9 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PRAMEF9 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of PRAMEF9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of PRAMEF9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with PRAMEF9 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with PRAMEF9 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of PRAMEF9 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with PRAMEF9 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with PRAMEF9 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PRAMEF9 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of PRAMEF9 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving PRAMEF9 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving PRAMEF9 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing PRAMEF9 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing PRAMEF9 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by PRAMEF9 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by PRAMEF9 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by PRAMEF9 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of PRAMEF9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of PRAMEF9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of PRAMEF9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain PRAMEF9 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by PRAMEF9 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of PRAMEF9 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| NURSA Protein Complexes | protein complexs containing PRAMEF9 protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of PRAMEF9 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of PRAMEF9 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of PRAMEF9 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of PRAMEF9 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of PRAMEF9 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with PRAMEF9 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with PRAMEF9 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |