| Name | ribosomal protein L13a pseudogene 3 |
| Description | Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nCRABP2 plays a dual role in cancer biology by modulating retinoic acid (RA) signaling. In malignant cells such as lung cancer, elevated CRABP2 levels enhance metastatic properties by promoting cell migration, invasion, and resistance to anoikis. In this context, CRABP2 interacts with the RNA‐binding protein HuR to stabilize specific mRNAs that are key to apoptotic and cell cycle regulation, thereby exerting both pro‐ and anti‐oncogenic effects depending on the cellular context."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nDuring embryogenesis and cellular differentiation, CRABP2 is a critical mediator of RA-dependent transcriptional programs. In embryonic stem cells, RA triggers a dramatic increase in CRABP transcripts, a process finely tuned by deacetylation events (for example, via SIRT1 action on CRABPII) that control nuclear translocation and gene activation. In addition, downregulation of CRABP2 is necessary for the progression of adipogenesis, whereas its upregulation facilitates myogenic differentiation by regulating cell cycle progression under the control of transcription factors such as MyoD and Sp1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its roles in oncogenesis and differentiation, CRABP2 contributes to tissue homeostasis and regeneration in diverse systems. Within the skin and hair follicles, CRABP2 is part of a tightly regulated RA biosynthetic pathway that coordinates hair cycling and epidermal differentiation; reduced levels of CRABP2 in aged skin correlate with diminished keratinocyte function and dermal integrity. Moreover, in immune cells such as dendritic cells, CRABP2 is required for converting vitamin A precursors into active RA, which is crucial for T cell specification in the gut. Finally, during nerve regeneration, increased CRABP2 expression has been associated with enhanced axon branching, underscoring its role in neural repair processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Amanda C Vreeland, Shuiliang Yu, Liraz Levi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcript stabilization by the RNA-binding protein HuR is regulated by cellular retinoic acid-binding protein 2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00281-14"}], "href": "https://doi.org/10.1128/MCB.00281-14"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24687854"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24687854"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Amanda C Vreeland, Liraz Levi, Wei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cellular retinoic acid-binding protein 2 inhibits tumor growth by two distinct mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M114.604041"}], "href": "https://doi.org/10.1074/jbc.M114.604041"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25320093"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25320093"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jun-I Wu, Yi-Pei Lin, Chien-Wei Tseng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crabp2 Promotes Metastasis of Lung Cancer Cells via HuR and Integrin β1/FAK/ERK Signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-37443-4"}], "href": "https://doi.org/10.1038/s41598-018-37443-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30696915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30696915"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Michelle A Lane, Juliana Xu, Elana W Wilen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIF removal increases CRABPI and CRABPII transcripts in embryonic stem cells cultured in retinol or 4-oxoretinol."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Endocrinol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mce.2007.09.010"}], "href": "https://doi.org/10.1016/j.mce.2007.09.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18006143"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18006143"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Daniel C Berry, Hooman Soltanian, Noa Noy "}, {"type": "b", "children": [{"type": "t", "text": "Repression of cellular retinoic acid-binding protein II during adipocyte differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.110635"}], "href": "https://doi.org/10.1074/jbc.M110.110635"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20228061"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20228061"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jing Yuan, Zhonglin Tang, Shulin Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CRABP2 promotes myoblast differentiation and is modulated by the transcription factors MyoD and Sp1 in C2C12 cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0055479"}], "href": "https://doi.org/10.1371/journal.pone.0055479"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23383201"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23383201"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Shuang Tang, Gang Huang, Wei Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SIRT1-mediated deacetylation of CRABPII regulates cellular retinoic acid signaling and modulates embryonic stem cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2014.07.011"}], "href": "https://doi.org/10.1016/j.molcel.2014.07.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25155613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25155613"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Helen B Everts, John P Sundberg, Lloyd E King, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Immunolocalization of enzymes, binding proteins, and receptors sufficient for retinoic acid synthesis and signaling during the hair cycle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.jid.5700753"}], "href": "https://doi.org/10.1038/sj.jid.5700753"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17363914"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17363914"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Benjamin Dieplinger, Natalia Schiefermeier, Michaela Juchum-Pasquazzo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcriptional corepressor TPA-inducible sequence 7 regulates adult axon growth through cellular retinoic acid binding protein II expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurosci (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1460-9568.2007.05951.x"}], "href": "https://doi.org/10.1111/j.1460-9568.2007.05951.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18052984"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18052984"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Adrienn Gyöngyösi, Istvan Szatmari, Attila Pap, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RDH10, RALDH2, and CRABP2 are required components of PPARγ-directed ATRA synthesis and signaling in human dendritic cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M038984"}], "href": "https://doi.org/10.1194/jlr.M038984"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23833249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23833249"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Alessandra Bielli, Maria Giovanna Scioli, Federico D'Amico, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cellular retinoic acid binding protein-II expression and its potential role in skin aging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.101813"}], "href": "https://doi.org/10.18632/aging.101813"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30888968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30888968"}]}]}]}
|
| Synonyms | RPL13A_11_1370 |
| Proteins | R13P3_HUMAN |
| NCBI Gene ID | 645683 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RPL13AP3 has 1,013 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.
Click the + buttons to view associations for RPL13AP3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RPL13AP3 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of RPL13AP3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RPL13AP3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPL13AP3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RPL13AP3 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of RPL13AP3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing RPL13AP3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPL13AP3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RPL13AP3 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RPL13AP3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of RPL13AP3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of RPL13AP3 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RPL13AP3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of RPL13AP3 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing RPL13AP3 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of RPL13AP3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with RPL13AP3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of RPL13AP3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPL13AP3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of RPL13AP3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for RPL13AP3 from the Pathway Commons Protein-Protein Interactions dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RPL13AP3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of RPL13AP3 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of RPL13AP3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of RPL13AP3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |