| HGNC Family | Ion channels |
| Name | sodium channel, voltage gated, type V alpha subunit |
| Description | The protein encoded by this gene is an integral membrane protein and tetrodotoxin-resistant voltage-gated sodium channel subunit. This protein is found primarily in cardiac muscle and is responsible for the initial upstroke of the action potential in an electrocardiogram. Defects in this gene have been associated with long QT syndrome type 3 (LQT3), atrial fibrillation, cardiomyopathy, and Brugada syndrome 1, all autosomal dominant cardiac diseases. Alternative splicing results in several transcript variants encoding different isoforms. [provided by RefSeq, May 2022] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSCN5A encodes the pore‐forming α‐subunit of the cardiac sodium channel (Na(v)1.5), which is essential for the initiation and propagation of action potentials in the heart. Alterations in SCN5A lead to a broad spectrum of cardiac electrophysiological disorders. Gain‐of‐function mutations can delay inactivation and increase late sodium current, as seen in long QT syndrome type 3 (LQT3), whereas loss‐of‐function mutations predispose to Brugada syndrome and progressive cardiac conduction defects. In addition, genetic screens and genome‐wide association studies have revealed both rare mutations and common polymorphisms that influence conduction parameters such as the QT and PR intervals, as well as susceptibility to atrial fibrillation, sudden infant death, and complex overlap syndromes. These findings emphasize a gene‐specific basis for arrhythmia triggers and variable disease penetrance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "33"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, Na(v)1.5 function is tightly regulated by an intricate network of protein–protein interactions and post‐translational mechanisms. The channel contains conserved motifs—including a PDZ‐binding sequence—that mediate interactions with key structural and adaptor proteins such as ankyrin-G, dystrophin, and syntrophins. Such interactions are critical for proper membrane targeting and clustering of Na(v)1.5 at intercalated discs and T-tubules. In parallel, regulatory mechanisms such as ubiquitination via Nedd4-2 dynamically control the surface density of the channel without altering its intrinsic biophysical properties. Furthermore, common polymorphisms and splice variants of SCN5A can modulate the effects of pathogenic mutations, contributing to the variability of clinical phenotypes observed among affected individuals."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "34", "end_ref": "41"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nEmerging evidence also points to roles for SCN5A beyond traditional cardiac electrophysiology. Aberrant expression of Na(v)1.5 has been implicated in the invasive behavior of cancer cells, where increased sodium influx appears to promote cell motility and extracellular matrix degradation in colon and breast malignancies. Moreover, patient-specific induced pluripotent stem cell models harboring SCN5A mutations have provided valuable insights into the molecular and biophysical underpinnings of arrhythmia phenotypes, paving the way for personalized therapeutic strategies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "42", "end_ref": "44"}, {"type": "fg_f", "ref": "31"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "P J Schwartz, S G Priori, C Spazzolini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genotype-phenotype correlation in the long-QT syndrome: gene-specific triggers for life-threatening arrhythmias."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.cir.103.1.89"}], "href": "https://doi.org/10.1161/01.cir.103.1.89"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11136691"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11136691"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "F Kyndt, V Probst, F Potet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel SCN5A mutation leading either to isolated cardiac conduction defect or Brugada syndrome in a large French family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/hc5001.100834"}], "href": "https://doi.org/10.1161/hc5001.100834"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11748104"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11748104"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Matteo Vatta, Robert Dumaine, George Varghese, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic and biophysical basis of sudden unexplained nocturnal death syndrome (SUNDS), a disease allelic to Brugada syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/11.3.337"}], "href": "https://doi.org/10.1093/hmg/11.3.337"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11823453"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11823453"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ping Yang, Hideaki Kanki, Benoit Drolet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Allelic variants in long-QT disease genes in patients with drug-associated torsades de pointes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.cir.0000014448.19052.4c"}], "href": "https://doi.org/10.1161/01.cir.0000014448.19052.4c"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11997281"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11997281"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jeroen P P Smits, Lars Eckardt, Vincent Probst, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genotype-phenotype relationship in Brugada syndrome: electrocardiographic features differentiate SCN5A-related patients from non-SCN5A-related patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Coll Cardiol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0735-1097(02)01962-9"}], "href": "https://doi.org/10.1016/s0735-1097(02"}, {"type": "t", "text": "01962-9) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12106943"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12106943"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Igor Splawski, Katherine W Timothy, Michihiro Tateyama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variant of SCN5A sodium channel implicated in risk of cardiac arrhythmia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1073569"}], "href": "https://doi.org/10.1126/science.1073569"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12193783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12193783"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Prakash C Viswanathan, D Woodrow Benson, Jeffrey R Balser "}, {"type": "b", "children": [{"type": "t", "text": "A common SCN5A polymorphism modulates the biophysical effects of an SCN5A mutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI16879"}], "href": "https://doi.org/10.1172/JCI16879"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12569159"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12569159"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Aimée D C Paulussen, Ronaldus A H J Gilissen, Martin Armstrong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic variations of KCNQ1, KCNH2, SCN5A, KCNE1, and KCNE2 in drug-induced long QT syndrome patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Med (Berl) (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00109-003-0522-z"}], "href": "https://doi.org/10.1007/s00109-003-0522-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14760488"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14760488"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Peter Westenskow, Igor Splawski, Katherine W Timothy, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Compound mutations: a common cause of severe long-QT syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.CIR.0000125524.34234.13"}], "href": "https://doi.org/10.1161/01.CIR.0000125524.34234.13"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15051636"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15051636"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Silvia G Priori, Carlo Napolitano, Peter J Schwartz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of long QT syndrome loci and cardiac events among patients treated with beta-blockers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jama.292.11.1341"}], "href": "https://doi.org/10.1001/jama.292.11.1341"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15367556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15367556"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "William P McNair, Lisa Ku, Matthew R G Taylor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SCN5A mutation associated with dilated cardiomyopathy, conduction disorder, and arrhythmia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.CIR.0000144458.58660.BB"}], "href": "https://doi.org/10.1161/01.CIR.0000144458.58660.BB"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15466643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15466643"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "David J Tester, Melissa L Will, Carla M Haglund, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Compendium of cardiac channel mutations in 541 consecutive unrelated patients referred for long QT syndrome genetic testing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Heart Rhythm (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.hrthm.2005.01.020"}], "href": "https://doi.org/10.1016/j.hrthm.2005.01.020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15840476"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15840476"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Michael J Ackerman, Igor Splawski, Jonathan C Makielski, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spectrum and prevalence of cardiac sodium channel variants among black, white, Asian, and Hispanic individuals: implications for arrhythmogenic susceptibility and Brugada/long QT syndrome genetic testing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Heart Rhythm (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.hrthm.2004.07.013"}], "href": "https://doi.org/10.1016/j.hrthm.2004.07.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15851227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15851227"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Andrea Frustaci, Silvia G Priori, Maurizio Pieroni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac histological substrate in patients with clinical phenotype of Brugada syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.105.520999"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.105.520999"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16344400"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16344400"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Carlo Napolitano, Silvia G Priori, Peter J Schwartz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic testing in the long QT syndrome: development and validation of an efficient approach to genotyping in clinical practice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jama.294.23.2975"}], "href": "https://doi.org/10.1001/jama.294.23.2975"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16414944"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16414944"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Marianne Arnestad, Lia Crotti, Torleiv O Rognum, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prevalence of long-QT syndrome gene variants in sudden infant death syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.106.658021"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.106.658021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17210839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17210839"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Dao W Wang, Reshma R Desai, Lia Crotti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac sodium channel dysfunction in sudden infant death syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.106.646513"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.106.646513"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17210841"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17210841"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Barry London, Michael Michalec, Haider Mehdi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutation in glycerol-3-phosphate dehydrogenase 1 like gene (GPD1-L) decreases cardiac Na+ current and causes inherited arrhythmias."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.107.703330"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.107.703330"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17967977"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17967977"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Dawood Darbar, Prince J Kannankeril, Brian S Donahue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac sodium channel (SCN5A) variants associated with atrial fibrillation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.107.757955"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.107.757955"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18378609"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18378609"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Carol Ann Remme, Arthur A M Wilde, Connie R Bezzina "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac sodium channel overlap syndromes: different faces of SCN5A mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Trends Cardiovasc Med (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.tcm.2008.01.002"}], "href": "https://doi.org/10.1016/j.tcm.2008.01.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18436145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18436145"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Kazuo Ueda, Carmen Valdivia, Argelia Medeiros-Domingo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Syntrophin mutation associated with long QT syndrome through activation of the nNOS-SCN5A macromolecular complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0801294105"}], "href": "https://doi.org/10.1073/pnas.0801294105"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18591664"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18591664"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Paola G Meregalli, Hanno L Tan, Vincent Probst, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Type of SCN5A mutation determines clinical severity and degree of conduction slowing in loss-of-function sodium channelopathies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Heart Rhythm (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.hrthm.2008.11.009"}], "href": "https://doi.org/10.1016/j.hrthm.2008.11.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19251209"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19251209"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Christopher Newton-Cheh, Mark Eijgelsheim, Kenneth M Rice, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common variants at ten loci influence QT interval duration in the QTGEN Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.364"}], "href": "https://doi.org/10.1038/ng.364"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19305408"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19305408"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Arne Pfeufer, Serena Sanna, Dan E Arking, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common variants at ten loci modulate the QT interval duration in the QTSCD Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.362"}], "href": "https://doi.org/10.1038/ng.362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19305409"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19305409"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Jamie D Kapplinger, David J Tester, Benjamin A Salisbury, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Heart Rhythm (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.hrthm.2009.05.021"}], "href": "https://doi.org/10.1016/j.hrthm.2009.05.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19716085"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19716085"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Vincent Probst, Arthur A M Wilde, Julien Barc, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SCN5A mutations and the role of genetic background in the pathophysiology of Brugada syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Cardiovasc Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCGENETICS.109.853374"}], "href": "https://doi.org/10.1161/CIRCGENETICS.109.853374"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20031634"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20031634"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Arne Pfeufer, Charlotte van Noord, Kristin D Marciante, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study of PR interval."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.517"}], "href": "https://doi.org/10.1038/ng.517"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20062060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20062060"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Sami Viskin, Pieter G Postema, Zahurul A Bhuiyan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The response of the QT interval to the brief tachycardia provoked by standing: a bedside test for diagnosing long QT syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Coll Cardiol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jacc.2009.12.015"}], "href": "https://doi.org/10.1016/j.jacc.2009.12.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20116193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20116193"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Man Liu, Hong Liu, Samuel C Dudley "}, {"type": "b", "children": [{"type": "t", "text": "Reactive oxygen species originating from mitochondria regulate the cardiac sodium channel."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCRESAHA.110.220673"}], "href": "https://doi.org/10.1161/CIRCRESAHA.110.220673"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20724705"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20724705"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "William P McNair, Gianfranco Sinagra, Matthew R G Taylor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SCN5A mutations associate with arrhythmic dilated cardiomyopathy and commonly localize to the voltage-sensing mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Coll Cardiol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jacc.2010.09.084"}], "href": "https://doi.org/10.1016/j.jacc.2010.09.084"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21596231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21596231"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Cecile Terrenoire, Kai Wang, Kelvin W Chan Tung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Induced pluripotent stem cells used to reveal drug actions in a long QT syndrome family with complex genetics."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gen Physiol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1085/jgp.201210899"}], "href": "https://doi.org/10.1085/jgp.201210899"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23277474"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23277474"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Connie R Bezzina, Julien Barc, Yuka Mizusawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.2712"}], "href": "https://doi.org/10.1038/ng.2712"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23872634"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23872634"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Ping Liang, Karim Sallam, Haodi Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Patient-Specific and Genome-Edited Induced Pluripotent Stem Cell-Derived Cardiomyocytes Elucidate Single-Cell Phenotype of Brugada Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Coll Cardiol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jacc.2016.07.779"}], "href": "https://doi.org/10.1016/j.jacc.2016.07.779"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27810048"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27810048"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "W Antoinette Groenewegen, Mehran Firouzi, Connie R Bezzina, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A cardiac sodium channel mutation cosegregates with a rare connexin40 genotype in familial atrial standstill."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.res.0000050585.07097.d7"}], "href": "https://doi.org/10.1161/01.res.0000050585.07097.d7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12522116"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12522116"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Jonathan C Makielski, Bin Ye, Carmen R Valdivia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A ubiquitous splice variant and a common polymorphism affect heterologous expression of recombinant human SCN5A heart sodium channels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.RES.0000096652.14509.96"}], "href": "https://doi.org/10.1161/01.RES.0000096652.14509.96"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14500339"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14500339"}]}, {"type": "r", "ref": 36, "children": [{"type": "t", "text": "Miguel X van Bemmelen, Jean-Sébastien Rougier, Bruno Gavillet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac voltage-gated sodium channel Nav1.5 is regulated by Nedd4-2 mediated ubiquitination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.RES.0000136816.05109.89"}], "href": "https://doi.org/10.1161/01.RES.0000136816.05109.89"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15217910"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15217910"}]}, {"type": "r", "ref": 37, "children": [{"type": "t", "text": "Peter J Mohler, Ilaria Rivolta, Carlo Napolitano, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nav1.5 E1053K mutation causing Brugada syndrome blocks binding to ankyrin-G and expression of Nav1.5 on the surface of cardiomyocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0403711101"}], "href": "https://doi.org/10.1073/pnas.0403711101"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15579534"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15579534"}]}, {"type": "r", "ref": 38, "children": [{"type": "t", "text": "Connie R Bezzina, Wataru Shimizu, Ping Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common sodium channel promoter haplotype in asian subjects underlies variability in cardiac conduction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.105.580811"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.105.580811"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16415376"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16415376"}]}, {"type": "r", "ref": 39, "children": [{"type": "t", "text": "Bruno Gavillet, Jean-Sébastien Rougier, Andrea A Domenighetti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cardiac sodium channel Nav1.5 is regulated by a multiprotein complex composed of syntrophins and dystrophin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.RES.0000237466.13252.5e"}], "href": "https://doi.org/10.1161/01.RES.0000237466.13252.5e"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16857961"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16857961"}]}, {"type": "r", "ref": 40, "children": [{"type": "t", "text": "Séverine Petitprez, Anne-Flore Zmoos, Jakob Ogrodnik, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SAP97 and dystrophin macromolecular complexes determine two pools of cardiac sodium channels Nav1.5 in cardiomyocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCRESAHA.110.228312"}], "href": "https://doi.org/10.1161/CIRCRESAHA.110.228312"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21164104"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21164104"}]}, {"type": "r", "ref": 41, "children": [{"type": "t", "text": "Arthur A M Wilde, Ahmad S Amin "}, {"type": "b", "children": [{"type": "t", "text": "Clinical Spectrum of SCN5A Mutations: Long QT Syndrome, Brugada Syndrome, and Cardiomyopathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JACC Clin Electrophysiol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jacep.2018.03.006"}], "href": "https://doi.org/10.1016/j.jacep.2018.03.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29798782"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29798782"}]}, {"type": "r", "ref": 42, "children": [{"type": "t", "text": "Scott P Fraser, James K J Diss, Athina-Myrto Chioni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Voltage-gated sodium channel expression and potentiation of human breast cancer metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Cancer Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1078-0432.CCR-05-0327"}], "href": "https://doi.org/10.1158/1078-0432.CCR-05-0327"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16061851"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16061851"}]}, {"type": "r", "ref": 43, "children": [{"type": "t", "text": "Carrie D House, Charles J Vaske, Arnold M Schwartz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Voltage-gated Na+ channel SCN5A is a key regulator of a gene transcriptional network that controls colon cancer invasion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-10-1169"}], "href": "https://doi.org/10.1158/0008-5472.CAN-10-1169"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20651255"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20651255"}]}, {"type": "r", "ref": 44, "children": [{"type": "t", "text": "L Brisson, L Gillet, S Calaghan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Na(V)1.5 enhances breast cancer cell invasiveness by increasing NHE1-dependent H(+) efflux in caveolae."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2010.574"}], "href": "https://doi.org/10.1038/onc.2010.574"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21170089"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21170089"}]}]}]}
|
| Synonyms | HBBD, CDCD2, ICCD, IVF, CMPD2, PFHB1, CMD1E, VF1, LQT3, NAV1.5 |
| Proteins | SCN5A_HUMAN |
| NCBI Gene ID | 6331 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
SCN5A has 8,664 functional associations with biological entities spanning 9 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 131 datasets.
Click the + buttons to view associations for SCN5A from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Achilles Cell Line Gene Essentiality Profiles | cell lines with fitness changed by SCN5A gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset. | |
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SCN5A gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of SCN5A gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SCN5A gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of SCN5A gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SCN5A gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SCN5A gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of SCN5A gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCN5A gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of SCN5A gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with SCN5A gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCN5A gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SCN5A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of SCN5A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| ClinVar Gene-Phenotype Associations | phenotypes associated with SCN5A gene from the curated ClinVar Gene-Phenotype Associations dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with SCN5A gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SCN5A gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing SCN5A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing SCN5A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with SCN5A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with SCN5A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCN5A gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with SCN5A gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with SCN5A gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with SCN5A gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with SCN5A gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by SCN5A gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores | diseases involving SCN5A gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores 2025 | diseases involving SCN5A gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores | diseases associated with SCN5A gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with SCN5A gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with SCN5A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with SCN5A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with SCN5A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with SCN5A gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| DrugBank Drug Targets | interacting drugs for SCN5A protein from the curated DrugBank Drug Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SCN5A gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCN5A gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SCN5A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing SCN5A from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with SCN5A gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with SCN5A gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of SCN5A gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with SCN5A gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SCN5A from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of SCN5A gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving SCN5A gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving SCN5A gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving SCN5A gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing SCN5A protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing SCN5A protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing SCN5A protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by SCN5A gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by SCN5A gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by SCN5A gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of SCN5A gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SCN5A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of SCN5A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Guide to Pharmacology Chemical Ligands of Receptors | ligands (chemical) binding SCN5A receptor from the curated Guide to Pharmacology Chemical Ligands of Receptors dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with SCN5A gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with SCN5A gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with SCN5A gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with SCN5A gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of SCN5A gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HMDB Metabolites of Enzymes | interacting metabolites for SCN5A protein from the curated HMDB Metabolites of Enzymes dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of SCN5A gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of SCN5A gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HPO Gene-Disease Associations | phenotypes associated with SCN5A gene by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset. | |
| Hub Proteins Protein-Protein Interactions | interacting hub proteins for SCN5A from the curated Hub Proteins Protein-Protein Interactions dataset. | |
| HuBMAP ASCT+B Annotations | cell types associated with SCN5A gene from the HuBMAP ASCT+B dataset. | |
| HuBMAP ASCT+B Augmented with RNA-seq Coexpression | cell types associated with SCN5A gene from the HuBMAP ASCT+B Augmented with RNA-seq Coexpression dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with SCN5A gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for SCN5A protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of SCN5A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of SCN5A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SCN5A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| KEA Substrates of Kinases | kinases that phosphorylate SCN5A protein from the curated KEA Substrates of Kinases dataset. | |
| KEGG Pathways 2026 | pathways involving SCN5A protein from the KEGG Pathways 2026 dataset. | |
| Kinase Library Serine Threonine Kinome Atlas | kinases that phosphorylate SCN5A protein from the Kinase Library Serine Threonine Atlas dataset. | |
| Kinase Library Tyrosine Kinome Atlas | kinases that phosphorylate SCN5A protein from the Kinase Library Tyrosine Kinome Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCN5A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with SCN5A gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SCN5A gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of SCN5A gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing SCN5A protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain SCN5A protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by SCN5A gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SCN5A gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by SCN5A gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Cancer Gene Co-expression Modules | co-expressed genes for SCN5A from the MSigDB Cancer Gene Co-expression Modules dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of SCN5A gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of SCN5A gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| OMIM Gene-Disease Associations | phenotypes associated with SCN5A gene from the curated OMIM Gene-Disease Associations dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for SCN5A from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SCN5A gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of SCN5A gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving SCN5A protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving SCN5A protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with SCN5A protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| PhosphoSitePlus Substrates of Kinases | kinases that phosphorylate SCN5A protein from the curated PhosphoSitePlus Substrates of Kinases dataset. | |
| Reactome Pathways 2014 | pathways involving SCN5A protein from the Reactome Pathways dataset. | |
| Reactome Pathways 2024 | pathways involving SCN5A protein from the Reactome Pathways 2024 dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of SCN5A gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SCN5A gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SCN5A gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of SCN5A gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of SCN5A gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Tabula Sapiens Gene-Cell Associations | cell types with high or low expression of SCN5A gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of SCN5A gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of SCN5A gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of SCN5A gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SCN5A gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of SCN5A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of SCN5A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of SCN5A protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with SCN5A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with SCN5A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2014 | pathways involving SCN5A protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving SCN5A protein from the WikiPathways Pathways 2024 dataset. | |