| HGNC Family | Protein phosphatase 1 regulatory subunits (PPP1R), RNA binding motif containing (RBM) |
| Name | splicing factor proline/glutamine-rich |
| Description | Enables DNA binding activity; histone deacetylase binding activity; and protein homodimerization activity. Involved in several processes, including alternative mRNA splicing, via spliceosome; positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway; and regulation of transcription by RNA polymerase II. Acts upstream of or within double-strand break repair via homologous recombination. Located in chromatin; nuclear matrix; and paraspeckles. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSFPQ (also known as PSF) is a conserved, multifunctional nuclear protein that plays pivotal roles in RNA biogenesis and transcriptional regulation. It participates in pre‐mRNA splicing and alternative splicing events, and its ability to form dynamic higher‐order assemblies underlies the organization of nuclear bodies such as paraspeckles. In concert with its binding partner NONO, SFPQ couples transcription with RNA processing—for example, by linking strong transcriptional activators and the RNA polymerase II C‐terminal domain to specific splicing decisions, modulating pathways such as IRES‐dependent translation of key regulators (including p53) and the splicing of immune transcripts (e.g. CD45). Moreover, SFPQ is targeted by long noncoding RNAs (such as NEAT1 and MALAT1) that, by redistributing SFPQ within the nucleus, contribute to stimulus‐responsive gene expression (e.g. activation of antiviral cytokines) and impact tumor progression. Its structural features—including extended coiled‐coil domains that allow polymerization—are essential for these regulatory functions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its central roles in RNA processing, SFPQ is crucial for maintaining genomic stability. It participates in the repair of DNA double‐strand breaks by promoting nonhomologous end joining and homologous recombination—interacting directly with repair factors such as RAD51 and facilitating 3′ end processing via the recruitment of exonucleases like XRN2. Post‐translational modifications, including phosphorylation by oncogenic kinases (e.g. NPM/ALK), further modulate SFPQ’s repair activities. Disruption of these regulatory processes—manifest as aberrant splicing of its own transcript, altered nuclear retention, or sensitivity to replication stress (notably in BRAFV600E–driven tumors)—has been linked to neurodegenerative conditions such as tauopathies and ALS."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSFPQ also influences diverse cellular outcomes by modulating host–pathogen interactions, oncogenic signaling, and neuronal function. On one hand, it binds viral RNA elements—regulating the stability, transport, and translation of transcripts from pathogens such as HIV, Coxsackievirus, and influenza virus—and is even detectable at the cell surface where it can mediate bacterial invasion in meningitis. On the other hand, aberrant SFPQ activity contributes to tumorigenesis through gene fusions (as seen in SFPQ–TFE3 renal carcinomas) and by partnering with specific long noncoding RNAs (such as GAPLINC) to promote cellular invasion and chemoresistance. In neurons, SFPQ associates with kinesin motor complexes to facilitate long‐distance RNA transport, while its misregulation also underlies defects in circRNA biogenesis that may compromise neuronal homeostasis. Collectively, these roles position SFPQ as a central regulator whose multifaceted activities impact RNA metabolism, DNA repair, and cellular signaling in both health and disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "25", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yaron Shav-Tal, Dov Zipori "}, {"type": "b", "children": [{"type": "t", "text": "PSF and p54(nrb)/NonO--multi-functional nuclear proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0014-5793(02)03447-6"}], "href": "https://doi.org/10.1016/s0014-5793(02"}, {"type": "t", "text": "03447-6) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12417296"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12417296"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Emanuel Rosonina, Joanna Y Y Ip, John A Calarco, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Role for PSF in mediating transcriptional activator-dependent stimulation of pre-mRNA processing in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.15.6734-6746.2005"}], "href": "https://doi.org/10.1128/MCB.25.15.6734-6746.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16024807"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16024807"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Nan Zhong, Christina Y Kim, Patrizia Rizzu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DJ-1 transcriptionally up-regulates the human tyrosine hydroxylase by inhibiting the sumoylation of pyrimidine tract-binding protein-associated splicing factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M601935200"}], "href": "https://doi.org/10.1074/jbc.M601935200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16731528"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16731528"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xuesen Dong, Joan Sweet, John R G Challis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional activity of androgen receptor is modulated by two RNA splicing factors, PSF and p54nrb."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.02144-06"}], "href": "https://doi.org/10.1128/MCB.02144-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17452459"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17452459"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Tyra Hall-Pogar, Songchun Liang, Lisa K Hague, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Specific trans-acting proteins interact with auxiliary RNA polyadenylation elements in the COX-2 3'-UTR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.577707"}], "href": "https://doi.org/10.1261/rna.577707"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17507659"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17507659"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Florian Heyd, Kristen W Lynch "}, {"type": "b", "children": [{"type": "t", "text": "Phosphorylation-dependent regulation of PSF by GSK3 controls CD45 alternative splicing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2010.09.013"}], "href": "https://doi.org/10.1016/j.molcel.2010.09.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20932480"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20932480"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Lijie Dong, Xinyu Zhang, Xiao Fu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTB-associated splicing factor (PSF) functions as a repressor of STAT6-mediated Ig epsilon gene transcription by recruitment of HDAC1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.168377"}], "href": "https://doi.org/10.1074/jbc.M110.168377"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21106524"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21106524"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Liangliang Liu, Ning Xie, Paul Rennie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Consensus PP1 binding motifs regulate transcriptional corepression and alternative RNA splicing activities of the steroid receptor coregulators, p54nrb and PSF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Endocrinol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/me.2010-0517"}], "href": "https://doi.org/10.1210/me.2010-0517"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21566083"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21566083"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Arandkar Sharathchandra, Ridhima Lal, Debjit Khan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Annexin A2 and PSF proteins interact with p53 IRES and regulate translation of p53 mRNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/rna.22707"}], "href": "https://doi.org/10.4161/rna.22707"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23131771"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23131771"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Katsutoshi Imamura, Naoto Imamachi, Gen Akizuki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2014.01.009"}], "href": "https://doi.org/10.1016/j.molcel.2014.01.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24507715"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24507715"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Q Ji, L Zhang, X Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA MALAT1 promotes tumour growth and metastasis in colorectal cancer through binding to SFPQ and releasing oncogene PTBP2 from SFPQ/PTBP2 complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Br J Cancer (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/bjc.2014.383"}], "href": "https://doi.org/10.1038/bjc.2014.383"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25025966"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25025966"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Mihwa Lee, Agata Sadowska, Indra Bekere, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The structure of human SFPQ reveals a coiled-coil mediated polymer essential for functional aggregation in gene regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkv156"}], "href": "https://doi.org/10.1093/nar/gkv156"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25765647"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25765647"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Li Jiang, Changwei Shao, Qi-Jia Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.3455"}], "href": "https://doi.org/10.1038/nsmb.3455"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28846091"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28846091"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Catherine L Bladen, Durga Udayakumar, Yoshihiko Takeda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of the polypyrimidine tract binding protein-associated splicing factor.p54(nrb) complex as a candidate DNA double-strand break rejoining factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M412758200"}], "href": "https://doi.org/10.1074/jbc.M412758200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15590677"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15590677"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Syuzo Kaneko, Orit Rozenblatt-Rosen, Matthew Meyerson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription termination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1565207"}], "href": "https://doi.org/10.1101/gad.1565207"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17639083"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17639083"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Maria Buxadé, Nick Morrice, Danielle L Krebs, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M705286200"}], "href": "https://doi.org/10.1074/jbc.M705286200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17965020"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17965020"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Isabel Tapia-Páez, Kristiina Tammimies, Satu Massinen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The complex of TFII-I, PARP1, and SFPQ proteins regulates the DYX1C1 gene implicated in neuronal migration and dyslexia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.07-104455"}], "href": "https://doi.org/10.1096/fj.07-104455"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18445785"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18445785"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Yuichi Morozumi, Yoshimasa Takizawa, Motoki Takaku, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human PSF binds to RAD51 and modulates its homologous-pairing and strand-exchange activities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkp298"}], "href": "https://doi.org/10.1093/nar/gkp298"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19447914"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19447914"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "I-Wei Chang, Hsuan-Ying Huang, Ming-Tse Sung "}, {"type": "b", "children": [{"type": "t", "text": "Melanotic Xp11 translocation renal cancer: a case with PSF-TFE3 gene fusion and up-regulation of melanogenetic transcripts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Surg Pathol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/PAS.0b013e3181ba7a5f"}], "href": "https://doi.org/10.1097/PAS.0b013e3181ba7a5f"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19809274"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19809274"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Maayan Salton, Yaniv Lerenthal, Shih-Ya Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/cc.9.8.11298"}], "href": "https://doi.org/10.4161/cc.9.8.11298"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20421735"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20421735"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Kyungsoo Ha, Yoshihiko Takeda, William S Dynan "}, {"type": "b", "children": [{"type": "t", "text": "Sequences in PSF/SFPQ mediate radioresistance and recruitment of PSF/SFPQ-containing complexes to DNA damage sites in human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2010.11.009"}], "href": "https://doi.org/10.1016/j.dnarep.2010.11.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21144806"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21144806"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Lahcen Jaafar, Zhentian Li, Shuyi Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SFPQ•NONO and XLF function separately and together to promote DNA double-strand break repair via canonical nonhomologous end joining."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkw1209"}], "href": "https://doi.org/10.1093/nar/gkw1209"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27924002"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27924002"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Raphaelle Luisier, Giulia E Tyzack, Claire E Hall, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-018-04373-8"}], "href": "https://doi.org/10.1038/s41467-018-04373-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29789581"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29789581"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Kathleen Klotz-Noack, Bertram Klinger, Maria Rivera, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SFPQ Depletion Is Synthetically Lethal with BRAF"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "V600E"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " in Colorectal Cancer Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2020.108184"}], "href": "https://doi.org/10.1016/j.celrep.2020.108184"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32966782"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32966782"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Andrei S Zolotukhin, Daniel Michalowski, Jenifer Bear, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PSF acts through the human immunodeficiency virus type 1 mRNA instability elements to regulate virus expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.23.18.6618-6630.2003"}], "href": "https://doi.org/10.1128/MCB.23.18.6618-6630.2003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12944487"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12944487"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Yanming Zou, Lina He, Chun-Hua Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PSF is an IbeA-binding protein contributing to meningitic Escherichia coli K1 invasion of human brain microvascular endothelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Microbiol Immunol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00430-006-0034-x"}], "href": "https://doi.org/10.1007/s00430-006-0034-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17318576"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17318576"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Sara Landeras-Bueno, Núria Jorba, Maite Pérez-Cidoncha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The splicing factor proline-glutamine rich (SFPQ/PSF) is involved in influenza virus transcription."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Pathog (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.ppat.1002397"}], "href": "https://doi.org/10.1371/journal.ppat.1002397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22114566"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22114566"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Peng Yang, Tao Chen, Zipeng Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA GAPLINC promotes invasion in colorectal cancer by targeting SNAI2 through binding with PSF and NONO."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.9741"}], "href": "https://doi.org/10.18632/oncotarget.9741"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27259250"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27259250"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Xiao-Tong Wang, Qiu-Yuan Xia, Hao Ni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SFPQ/PSF-TFE3 renal cell carcinoma: a clinicopathologic study emphasizing extended morphology and reviewing the differences between SFPQ-TFE3 RCC and the corresponding mesenchymal neoplasm despite an identical gene fusion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Pathol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.humpath.2017.02.022"}], "href": "https://doi.org/10.1016/j.humpath.2017.02.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28315422"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28315422"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "Pratik Dave, Biju George, Divya Khandige Sharma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Polypyrimidine tract-binding protein (PTB) and PTB-associated splicing factor in CVB3 infection: an ITAF for an ITAF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkx519"}], "href": "https://doi.org/10.1093/nar/gkx519"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28633417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28633417"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Hasanthi C de Silva, Mike Z Lin, Leo Phillips, et al. "}, {"type": "b", "children": [{"type": "t", "text": "IGFBP-3 interacts with NONO and SFPQ in PARP-dependent DNA damage repair in triple-negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Mol Life Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00018-019-03033-4"}], "href": "https://doi.org/10.1007/s00018-019-03033-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30725116"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30725116"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Ilenia Pellarin, Alessandra Dall'Acqua, Alice Gambelli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Splicing factor proline- and glutamine-rich (SFPQ) protein regulates platinum response in ovarian cancer-modulating SRSF2 activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-020-1292-6"}], "href": "https://doi.org/10.1038/s41388-020-1292-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32332923"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32332923"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Shi-Wei He, Cheng Xu, Ying-Qing Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "AR-induced long non-coding RNA LINC01503 facilitates proliferation and metastasis via the SFPQ-FOSL1 axis in nasopharyngeal carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-020-01388-8"}], "href": "https://doi.org/10.1038/s41388-020-01388-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32661324"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32661324"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "Lotte Victoria Winther Stagsted, Eoghan Thomas O'Leary, Karoline Kragh Ebbesen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.63088"}], "href": "https://doi.org/10.7554/eLife.63088"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33476259"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33476259"}]}]}]}
|
| Synonyms | POMP100, PPP1R140 |
| Proteins | SFPQ_HUMAN |
| NCBI Gene ID | 6421 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
SFPQ has 15,287 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 136 datasets.
Click the + buttons to view associations for SFPQ from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Achilles Cell Line Gene Essentiality Profiles | cell lines with fitness changed by SFPQ gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset. | |
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SFPQ gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of SFPQ gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SFPQ gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| Biocarta Pathways | pathways involving SFPQ protein from the Biocarta Pathways dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SFPQ gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SFPQ gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of SFPQ gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SFPQ gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene Mutation Profiles | cell lines with SFPQ gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with SFPQ protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with SFPQ gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SFPQ gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SFPQ gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of SFPQ gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SFPQ gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing SFPQ protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing SFPQ protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores | cellular components containing SFPQ protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing SFPQ protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with SFPQ protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with SFPQ protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| CORUM Protein Complexes | protein complexs containing SFPQ protein from the CORUM Protein Complexes dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SFPQ gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with SFPQ gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with SFPQ gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with SFPQ gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with SFPQ gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores | diseases associated with SFPQ gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with SFPQ gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with SFPQ gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with SFPQ gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with SFPQ gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with SFPQ gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SFPQ gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SFPQ gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SFPQ gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing SFPQ from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with SFPQ gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with SFPQ gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with SFPQ gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SFPQ from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of SFPQ gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving SFPQ gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving SFPQ gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving SFPQ gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing SFPQ protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing SFPQ protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing SFPQ protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by SFPQ gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by SFPQ gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by SFPQ gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SFPQ gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of SFPQ gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with SFPQ gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with SFPQ gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HMDB Metabolites of Enzymes | interacting metabolites for SFPQ protein from the curated HMDB Metabolites of Enzymes dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of SFPQ gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of SFPQ protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HPM Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of SFPQ protein relative to other cell types and tissues from the HPM Cell Type and Tissue Protein Expression Profiles dataset. | |
| Hub Proteins Protein-Protein Interactions | interacting hub proteins for SFPQ from the curated Hub Proteins Protein-Protein Interactions dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by SFPQ gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for SFPQ protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of SFPQ gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of SFPQ gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SFPQ gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| KEA Substrates of Kinases | kinases that phosphorylate SFPQ protein from the curated KEA Substrates of Kinases dataset. | |
| Kinase Library Serine Threonine Kinome Atlas | kinases that phosphorylate SFPQ protein from the Kinase Library Serine Threonine Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SFPQ gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SFPQ gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with SFPQ gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SFPQ gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of SFPQ gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of SFPQ gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SFPQ gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing SFPQ protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain SFPQ protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by SFPQ gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting SFPQ gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SFPQ gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by SFPQ gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Cancer Gene Co-expression Modules | co-expressed genes for SFPQ from the MSigDB Cancer Gene Co-expression Modules dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of SFPQ gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of SFPQ gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| NURSA Protein Complexes | protein complexs containing SFPQ protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for SFPQ from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SFPQ gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of SFPQ gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving SFPQ protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving SFPQ protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with SFPQ protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| PhosphoSitePlus Substrates of Kinases | kinases that phosphorylate SFPQ protein from the curated PhosphoSitePlus Substrates of Kinases dataset. | |
| ProteomicsDB Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of SFPQ protein relative to other cell types and tissues from the ProteomicsDB Cell Type and Tissue Protein Expression Profiles dataset. | |
| Reactome Pathways 2024 | pathways involving SFPQ protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SFPQ gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SFPQ gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SFPQ gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of SFPQ gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of SFPQ gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SFPQ gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of SFPQ gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of SFPQ gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sanger Dependency Map Cancer Cell Line Proteomics | cell lines associated with SFPQ protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of SFPQ gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs | drug perturbations changing phosphorylation of SFPQ protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs dataset. | |
| SynGO Synaptic Gene Annotations | synaptic terms associated with SFPQ gene from the SynGO Synaptic Gene Annotations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of SFPQ gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of SFPQ gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of SFPQ gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SFPQ gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of SFPQ protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of SFPQ protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of SFPQ protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of SFPQ protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with SFPQ protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with SFPQ protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| Virus MINT Protein-Viral Protein Interactions | interacting viral proteins for SFPQ from the Virus MINT Protein-Viral Protein Interactions dataset. | |
| Virus MINT Protein-Virus Interactions | viruses interacting with SFPQ from the Virus MINT Protein-Virus Interactions dataset. | |
| WikiPathways Pathways 2014 | pathways involving SFPQ protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving SFPQ protein from the WikiPathways Pathways 2024 dataset. | |