SMIM10L2B Gene

Name small integral membrane protein 10 like 2B
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies underscore the critical importance of extracellular matrix cues – notably laminin isoforms – in regulating cell adhesion, differentiation, and structural stability across diverse tissues. For example, laminin-111 was shown to up‐regulate integrin expression in dystrophic skeletal muscle thereby stabilizing the sarcolemma and mitigating damage in Duchenne muscular dystrophy (a finding reported in."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, a matrix metalloproteinase–generated fragment of laminin-111 modulates integrin signaling to drive early embryonic stem cell differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Although none of these studies explicitly mention SMIM10L2B, by virtue of its classification as a small integral membrane protein, it is plausible that SMIM10L2B participates in similar pathways that couple extracellular matrix dynamics with cellular responses.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther research has detailed how laminin-integrin interactions orchestrate key events in nerve development and renal basement membrane assembly. In the peripheral nervous system, for instance, laminin can temper neuregulin signaling to finely control the timing and extent of myelination"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while in kidney glomeruli, differential expression of laminin chains helps maintain the filtration barrier."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In ex vivo organoid models, laminin-enriched substrates synergize with growth factors to promote proper epithelial differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Given these findings, SMIM10L2B may function as a modulatory component at the plasma membrane—potentially acting either as an adaptor or regulator—to fine-tune receptor-mediated signaling cascades in similar contexts.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, extracellular matrix interactions extend their influence to neural plasticity and vascular homeostasis. In neuropathic pain models, for example, altered laminin/integrin signaling in the anterior cingulate cortex drives maladaptive neuronal remodeling"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while studies of endothelial cells indicate that matrix composition affects vascular functions, especially in aging."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Investigations into the structural organization of basement membranes using laminin LN domain models"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "and genetic studies of laminin mutations yielding movement disorders"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "emphasize the broader significance of cell–extracellular matrix interplay. In this context, SMIM10L2B might contribute to the integration of extracellular information with intracellular signaling mechanisms, thereby affecting processes ranging from synaptic modulation and pain perception to organogenesis.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jachinta E Rooney, Praveen B Gurpur, Dean J Burkin "}, {"type": "b", "children": [{"type": "t", "text": "Laminin-111 protein therapy prevents muscle disease in the mdx mouse model for Duchenne muscular dystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0811599106"}], "href": "https://doi.org/10.1073/pnas.0811599106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19416897"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19416897"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Christine-Maria Horejs, Andrea Serio, Alan Purvis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Biologically-active laminin-111 fragment that modulates the epithelial-to-mesenchymal transition in embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1403139111"}], "href": "https://doi.org/10.1073/pnas.1403139111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24706882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24706882"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Monica Ghidinelli, Yannick Poitelon, Yoon Kyoung Shin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Laminin 211 inhibits protein kinase A in Schwann cells to modulate neuregulin 1 type III-driven myelination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pbio.2001408"}], "href": "https://doi.org/10.1371/journal.pbio.2001408"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28636612"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28636612"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jung Hee Suh, George Jarad, Rene G VanDeVoorde, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Forced expression of laminin beta1 in podocytes prevents nephrotic syndrome in mice lacking laminin beta2, a model for Pierson syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1108269108"}], "href": "https://doi.org/10.1073/pnas.1108269108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21876163"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21876163"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zeinab F Hosseini, Deirdre A Nelson, Nicholas Moskwa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FGF2-dependent mesenchyme and laminin-111 are niche factors in salivary gland organoids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.208728"}], "href": "https://doi.org/10.1242/jcs.208728"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29361536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29361536"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zhen-Zhen Li, Wen-Juan Han, Zhi-Chuan Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Extracellular matrix protein laminin β1 regulates pain sensitivity and anxiodepression-like behaviors in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI146323"}], "href": "https://doi.org/10.1172/JCI146323"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34156983"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34156983"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Julian U G Wagner, Emmanouil Chavakis, Eva-Maria Rogg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Switch in Laminin β2 to Laminin β1 Isoforms During Aging Controls Endothelial Cell Functions-Brief Report."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.117.310685"}], "href": "https://doi.org/10.1161/ATVBAHA.117.310685"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29599141"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29599141"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Stefan Kalkhof, Sebastian Haehn, Mats Paulsson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proteins (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/prot.22848"}], "href": "https://doi.org/10.1002/prot.22848"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20939100"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20939100"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yi Bessie Liu, Ambika Tewari, Johnny Salameh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A dystonia-like movement disorder with brain and spinal neuronal defects is caused by mutation of the mouse laminin β1 subunit, Lamb1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.11102"}], "href": "https://doi.org/10.7554/eLife.11102"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26705335"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26705335"}]}]}]}
Synonyms NCRNA00087, SMIM10L2A, LINC00087
NCBI Gene ID 644596
API
Download Associations
Predicted Functions View SMIM10L2B's ARCHS4 Predicted Functions.
Co-expressed Genes View SMIM10L2B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SMIM10L2B's ARCHS4 Predicted Functions.

Functional Associations

SMIM10L2B has 2,567 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 34 datasets.

Click the + buttons to view associations for SMIM10L2B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SMIM10L2B gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SMIM10L2B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of SMIM10L2B gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SMIM10L2B gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SMIM10L2B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SMIM10L2B gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SMIM10L2B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SMIM10L2B gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SMIM10L2B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SMIM10L2B gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SMIM10L2B gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with SMIM10L2B gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with SMIM10L2B gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SMIM10L2B gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SMIM10L2B gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SMIM10L2B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SMIM10L2B gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SMIM10L2B gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SMIM10L2B gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of SMIM10L2B gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx eQTL 2025 SNPs regulating expression of SMIM10L2B gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SMIM10L2B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SMIM10L2B gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SMIM10L2B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SMIM10L2B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SMIM10L2B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SMIM10L2B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of SMIM10L2B gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SMIM10L2B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SMIM10L2B gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SMIM10L2B gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SMIM10L2B gene from the RummaGEO Gene Perturbation Signatures dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SMIM10L2B gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SMIM10L2B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.