| Name | SPATA31 subfamily D, member 3 |
| Description | Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough SPATA31D3 is less well characterized than classical actin‐regulatory kinases, accumulating evidence from studies on cytoskeletal reorganization indicates that factors governing actin assembly—including the Rho/ROCK–LIMK–cofilin cascade—are central to many cellular processes. In paradigms where transforming growth factor beta (TGF‑β) signaling and small GTPases trigger rapid actin polymerization and stress fiber formation, LIM kinases phosphorylate cofilin to mediate cytoskeletal remodeling, thereby affecting cell adhesion, motility, and morphology. By analogy, SPATA31D3 may participate in or modulate these pathways, contributing to the regulation of actin dynamics in response to extracellular signals."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nStudies in diverse model systems have established that the reorganization of the actin cytoskeleton governs important biological events ranging from epithelial migration and synaptic function to embryonic development and mechanosensitive osteoblast differentiation. The coordinated activity of RhoA, ROCK, and LIMK is critical for processes such as eyelid closure, oocyte spindle migration, and proper synaptic transmission, while altered cytoskeletal dynamics also impact cell proliferation and differentiation in pathological settings like cancer progression and tissue fibrosis. These multifaceted roles of actin regulators suggest that SPATA31D3 might similarly be involved—either as an upstream modulator or as part of a broader network influencing cytoskeletal architecture—to fine‐tune cellular responses during development and stress."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nEmerging research further implicates actin-regulatory signaling in neural plasticity, platelet functionality, and fibrotic remodeling after injury. Investigations into synaptic scaling, cortical development, and tumor metastasis reveal that modulating cofilin activity via LIM kinases can have profound effects on cell structure and function. Although direct experimental data on SPATA31D3 remain limited, its inclusion in studies addressing the broader spectrum of actin dynamics raises the possibility that it contributes to these critical processes. Clarifying SPATA31D3’s role—whether by interfacing with key signaling molecules like LIMK or affecting downstream events such as receptor internalization and transcriptional regulation—could provide valuable insights into mechanisms underlying cell motility, differentiation, and pathological remodeling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yanghong Meng, Hisaaki Takahashi, Jinsong Meng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of ADF/cofilin phosphorylation and synaptic function by LIM-kinase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuropharmacology (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuropharm.2004.06.030"}], "href": "https://doi.org/10.1016/j.neuropharm.2004.06.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15458846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15458846"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lina Vardouli, Aristidis Moustakas, Christos Stournaras "}, {"type": "b", "children": [{"type": "t", "text": "LIM-kinase 2 and cofilin phosphorylation mediate actin cytoskeleton reorganization induced by transforming growth factor-beta."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M402651200"}], "href": "https://doi.org/10.1074/jbc.M402651200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15647284"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15647284"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Seiichi Koike, Kazuko Keino-Masu, Tatsuyuki Ohto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Autotaxin/lysophospholipase D-mediated lysophosphatidic acid signaling is required to form distinctive large lysosomes in the visceral endoderm cells of the mouse yolk sac."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.012716"}], "href": "https://doi.org/10.1074/jbc.M109.012716"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19808661"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19808661"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yi-ping Zhang, Feng Qin, Chang-jing Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Effects of LIMK2 RNA interference on the mechanosensitivity of c-fos gene in osteoblast]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhonghua Yi Xue Za Zhi (2009)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20193279"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20193279"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Dennis S Rice, Gwenn M Hansen, Feng Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Keratinocyte migration in the developing eyelid requires LIMK2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0047168"}], "href": "https://doi.org/10.1371/journal.pone.0047168"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23071748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23071748"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Filipe C Lourenço, June Munro, Jennifer Brown, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced LIMK2 expression in colorectal cancer reflects its role in limiting stem cell proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gut (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/gutjnl-2012-303883"}], "href": "https://doi.org/10.1136/gutjnl-2012-303883"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23585469"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23585469"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Zhi Yang, Shuyi Tan, Yun Shen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibition of FSS-induced actin cytoskeleton reorganization by silencing LIMK2 gene increases the mechanosensitivity of primary osteoblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bone (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bone.2014.12.024"}], "href": "https://doi.org/10.1016/j.bone.2014.12.024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25549868"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25549868"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Xiangyu Yang, Guiqin He, Xiaoyun Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transient inhibition of LIMKs significantly attenuated central sensitization and delayed the development of chronic pain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuropharmacology (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuropharm.2017.06.031"}], "href": "https://doi.org/10.1016/j.neuropharm.2017.06.031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28669900"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28669900"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Xing Duan, Yu Zhang, Kun-Lin Chen, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Involvement of LIMK1/2 in actin assembly during mouse embryo development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2018.1482138"}], "href": "https://doi.org/10.1080/15384101.2018.1482138"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29943641"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29943641"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Qiaojun Fang, Yuhua Zhang, Peng Da, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of Limk1 and Limk2 in mice does not alter cochlear development or auditory function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-019-39769-z"}], "href": "https://doi.org/10.1038/s41598-019-39769-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30833597"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30833597"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Rui Mao, Rui Deng, Yan Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIMK1 and LIMK2 regulate cortical development through affecting neural progenitor cell proliferation and migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Brain (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13041-019-0487-7"}], "href": "https://doi.org/10.1186/s13041-019-0487-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31319858"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31319858"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Juliana Antonipillai, Kevin Mittelstaedt, Sheena Rigby, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIM kinase 2 (LIMK2) may play an essential role in platelet function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2020.111822"}], "href": "https://doi.org/10.1016/j.yexcr.2020.111822"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31926945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31926945"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Y-L Huang, X-H Li, H Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Metabolites of intestinal microflora upregulate miR-192-5p to suppress proliferation of colon cancer cells via RhoA-ROCK-LIMK2 pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_202002_20357"}], "href": "https://doi.org/10.26355/eurrev_202002_20357"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32141548"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32141548"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Qun Huang, Hao Chai, Shendong Wang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "NGPF2 triggers synaptic scaling up through ALK-LIMK-cofilin-mediated mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2021.109515"}], "href": "https://doi.org/10.1016/j.celrep.2021.109515"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34407403"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34407403"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Parmanand Malvi, Dhana Sekhar Reddy, Raj Kumar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIMK2 promotes melanoma tumor growth and metastasis through G3BP1-ESM1 pathway-mediated apoptosis inhibition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-023-02658-x"}], "href": "https://doi.org/10.1038/s41388-023-02658-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36922679"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36922679"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Chenyi Gong, Lei Chang, Rong Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIM kinase 2 activates cardiac fibroblasts and exacerbates postinfarction left ventricular remodeling via crosstalk between the canonical and non-canonical Wnt pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pharmacol Res (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.phrs.2024.107347"}], "href": "https://doi.org/10.1016/j.phrs.2024.107347"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39153710"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39153710"}]}]}]}
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| Synonyms | FAM75D3 |
| Proteins | S31D3_HUMAN |
| NCBI Gene ID | 389762 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SPATA31D3 has 597 functional associations with biological entities spanning 7 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.
Click the + buttons to view associations for SPATA31D3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SPATA31D3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of SPATA31D3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SPATA31D3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SPATA31D3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SPATA31D3 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SPATA31D3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of SPATA31D3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with SPATA31D3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SPATA31D3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with SPATA31D3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SPATA31D3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SPATA31D3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SPATA31D3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving SPATA31D3 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing SPATA31D3 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SPATA31D3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with SPATA31D3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for SPATA31D3 protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of SPATA31D3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SPATA31D3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SPATA31D3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain SPATA31D3 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of SPATA31D3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of SPATA31D3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of SPATA31D3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of SPATA31D3 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of SPATA31D3 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of SPATA31D3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with SPATA31D3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |