TBC1D3K Gene

Name TBC1 domain family, member 3K
Description Predicted to enable GTPase activator activity. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts directly mention TBC1D3K, a careful review of this body of literature reveals extensive insights into the functions of cell polarity regulators—most notably, mammalian Lgl1, the homolog of Drosophila lethal giant larvae. These studies demonstrate that Lgl1 is essential for maintaining apical–basal polarity, directing asymmetric cell division, and ensuring proper cell differentiation. In the absence of Lgl1, cells show disrupted localization of key determinants (such as the Notch inhibitor Numb) and altered cytoskeletal dynamics that ultimately compromise tissue organization and promote tumorigenesis. Such roles have been evidenced in multiple systems including neural progenitors, epithelia, and migrating cells, where loss or misregulation of Lgl1 is linked to abnormal cell proliferation and apoptosis during development."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations have detailed Lgl1’s key functions in neural development and tumor suppression. Conditional knockouts in various brain regions have resulted in phenotypes ranging from cortical dysplasia, disrupted radial glial organization, and formation of ectopic mass lesions reminiscent of subcortical band heterotopia, to impaired olfaction and cerebellar malformation. Moreover, Lgl1 modulates neural stem cell dynamics by coordinating the interplay between polarity complexes, adhesion molecules (for example, N-cadherin), and cytoskeletal elements like nonmuscle myosin II, which collectively constrain inappropriate cell proliferation and support proper differentiation. The functional consequences of Lgl1 deficiency further extend to abnormal glial genesis and altered immune cell responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn parallel, studies addressing abnormalities in epithelial tissues, vascular calcification, and innate immunity underscore the broader significance of cell polarity in health and disease. For instance, disrupted polarity in pleural mesothelial cells or alveolar epithelial cells contributes to fibrotic processes, while impaired directional migration in epithelial branching morphogenesis is linked to altered integrin signaling. Although TBC1D3K itself is not directly discussed, the mechanistic frameworks established by these studies—highlighting how polarity regulators mediate endocytic routing, protein degradation (e.g., of HMGB1), and integration of signaling networks—invite the hypothesis that TBC1D3K might similarly participate in modulating cellular polarity and tissue organization. As such, these findings provide a conceptual basis for exploring whether TBC1D3K, like Lgl1, could influence tumor suppression, neural circuit assembly, and immune cell function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "17", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Olga Klezovitch, Tania E Fernandez, Stephen J Tapscott, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Abnormal cerebellar development and Purkinje cell defects in Lgl1-Pax2 conditional knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2014.07.007"}], "href": "https://doi.org/10.1016/j.ydbio.2014.07.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25050931"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25050931"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Tingting Zhang, Sen Zhang, Xinli Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Lgl1 Disrupts the Radial Glial Fiber-guided Cortical Neuronal Migration and Causes Subcortical Band Heterotopia in Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2018.12.039"}], "href": "https://doi.org/10.1016/j.neuroscience.2018.12.039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30597194"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30597194"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Lin-Jie Song, Li-Ling Zhou, Meng Wang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "LCCL peptide cleavage after noise exposure exacerbates hearing loss and is associated with the monocyte infiltration in the cochlea."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hear Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.heares.2021.108378"}], "href": "https://doi.org/10.1016/j.heares.2021.108378"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34735822"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34735822"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Kelly M Ramsbottom, Faruk Sacirbegovic, Edwin D Hawkins, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lethal giant larvae-1 deficiency enhances the CD8(+) effector T-cell response to antigen challenge in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunol Cell Biol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/icb.2015.82"}], "href": "https://doi.org/10.1038/icb.2015.82"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26391810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26391810"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Tingting Zhang, Congzhe Hou, Sen Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lgl1 deficiency disrupts hippocampal development and impairs cognitive performance in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Brain Behav (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/gbb.12605"}], "href": "https://doi.org/10.1111/gbb.12605"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31415124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31415124"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Rongze Ma, Difei Gong, Huanyang You, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LGL1 binds to Integrin β1 and inhibits downstream signaling to promote epithelial branching in the mammary gland."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2022.110375"}], "href": "https://doi.org/10.1016/j.celrep.2022.110375"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35172155"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35172155"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Zhenzu Li, Tingting Zhang, Zhuchun Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lgl1 Is Required for Olfaction and Development of Olfactory Bulb in Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0162126"}], "href": "https://doi.org/10.1371/journal.pone.0162126"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27603780"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27603780"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Yu-Zhi Lu, Xin-Liang He, Fei Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bleomycin induced apical-basal polarity loss in alveolar epithelial cell contributes to experimental pulmonary fibrosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2020.112295"}], "href": "https://doi.org/10.1016/j.yexcr.2020.112295"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32971116"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32971116"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Yong-Soo Kim, Jihwan Song, Yukyung Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional and expression analyses of mgl-1, a mouse orthologue of lethal giant larvae recessive oncogene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Oncol (2003)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14612921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14612921"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Congzhe Hou, Aizhen Zhang, Yecheng Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Role of LGL1 in cerebellar primordium of embryonic mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroreport (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/WNR.0000000000002018"}], "href": "https://doi.org/10.1097/WNR.0000000000002018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38526932"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38526932"}]}]}]}
Proteins TBC3K_HUMAN
NCBI Gene ID 101060351
API
Download Associations
Predicted Functions View TBC1D3K's ARCHS4 Predicted Functions.
Co-expressed Genes View TBC1D3K's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TBC1D3K's ARCHS4 Predicted Functions.

Functional Associations

TBC1D3K has 197 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 15 datasets.

Click the + buttons to view associations for TBC1D3K from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TBC1D3K gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of TBC1D3K gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with TBC1D3K protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with TBC1D3K gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving TBC1D3K gene from the curated GO Biological Process Annotations 2023 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by TBC1D3K gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by TBC1D3K gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of TBC1D3K gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of TBC1D3K gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of TBC1D3K gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of TBC1D3K gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of TBC1D3K gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of TBC1D3K gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with TBC1D3K protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving TBC1D3K protein from the WikiPathways Pathways 2024 dataset.