| Name | TBC1 domain family, member 3L |
| Description | Predicted to enable GTPase activator activity. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTBC1D3 is a hominoid‐specific gene that plays a critical role in neural development. Its expression in cortical progenitors induces the delamination of ventricular radial glia and promotes the formation of self‐renewing basal progenitors—known as outer radial glia—that are abundantly found in primates. This activity not only contributes to enhanced progenitor proliferation but also appears to underlie cortical expansion and folding, processes that are essential for higher brain function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its developmental role, TBC1D3 modulates multiple growth factor receptor signaling pathways that contribute to oncogenesis. By enhancing epidermal growth factor (EGF)– and insulin/IGF-1–mediated signaling, TBC1D3 delays receptor degradation—partly by suppressing receptor ubiquitination—and consequently prolongs downstream Ras, Akt, and ERK activation. These actions increase cell proliferation and survival in both human and mouse models, while its interaction with microtubule components further stabilizes receptor signaling complexes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTBC1D3 also contributes to cancer cell migration. It upregulates expression of factors such as oxidized low density lipoprotein receptor 1 (OLR1) in a mechanism that involves activation of TNFα/NF-κB signaling, thereby promoting the motility of breast cancer cells. Moreover, interactions with calmodulin (CaM) protect TBC1D3 from growth factor–induced ubiquitination and degradation, further enhancing its capacity to sustain oncogenic signaling and migratory behavior."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe precise cellular levels and activity of TBC1D3 are controlled by complex post-translational modifications. Growth factor stimulation triggers TBC1D3 ubiquitination and degradation via the CUL7 E3 ligase complex—a process that is modulated by its phosphorylation status as well as its palmitoylation. Mutations that disrupt these modifications promote mislocalization and increase degradation efficiency, underscoring the importance of tight regulation of TBC1D3 turnover in both neural development and tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiang-Chun Ju, Qiong-Qiong Hou, Ai-Li Sheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The hominoid-specific gene TBC1D3 promotes generation of basal neural progenitors and induces cortical folding in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.18197"}], "href": "https://doi.org/10.7554/eLife.18197"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27504805"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27504805"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qiong-Qiong Hou, Qi Xiao, Xin-Yao Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TBC1D3 promotes neural progenitor proliferation by suppressing the histone methyltransferase G9a."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.aba8053"}], "href": "https://doi.org/10.1126/sciadv.aba8053"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33523893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33523893"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Marisa J Wainszelbaum, Audra J Charron, Chen Kong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The hominoid-specific oncogene TBC1D3 activates Ras and modulates epidermal growth factor receptor signaling and trafficking."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M800234200"}], "href": "https://doi.org/10.1074/jbc.M800234200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18319245"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18319245"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Didier Hodzic, Chen Kong, Marisa J Wainszelbaum, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TBC1D3, a hominoid oncoprotein, is encoded by a cluster of paralogues located on chromosome 17q12."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2006.05.009"}], "href": "https://doi.org/10.1016/j.ygeno.2006.05.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16863688"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16863688"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Marisa J Wainszelbaum, Jialu Liu, Chen Kong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TBC1D3, a hominoid-specific gene, delays IRS-1 degradation and promotes insulin signaling by modulating p70 S6 kinase activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0031225"}], "href": "https://doi.org/10.1371/journal.pone.0031225"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22348058"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22348058"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ze He, Tian Tian, Dan Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cytoplasmic retention of a nucleocytoplasmic protein TBC1D3 by microtubule network is required for enhanced EGFR signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0094134"}], "href": "https://doi.org/10.1371/journal.pone.0094134"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24714105"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24714105"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Bei Wang, Huzi Zhao, Lei Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Up-regulation of OLR1 expression by TBC1D3 through activation of TNFα/NF-κB pathway promotes the migration of human breast cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2017.08.021"}], "href": "https://doi.org/10.1016/j.canlet.2017.08.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28844714"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28844714"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Huzi Zhao, Lina Zhang, Yongchen Zhang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitination and degradation of the hominoid-specific oncoprotein TBC1D3 is mediated by CUL7 E3 ligase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0046485"}], "href": "https://doi.org/10.1371/journal.pone.0046485"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23029530"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23029530"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Chen Kong, Jeffrey J Lange, Dmitri Samovski, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitination and degradation of the hominoid-specific oncoprotein TBC1D3 is regulated by protein palmitoylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2013.04.001"}], "href": "https://doi.org/10.1016/j.bbrc.2013.04.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23578663"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23578663"}]}]}]}
|
| Proteins | TBC3L_HUMAN |
| NCBI Gene ID | 101060376 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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TBC1D3L has 1,111 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 10 datasets.
Click the + buttons to view associations for TBC1D3L from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of TBC1D3L gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of TBC1D3L gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by TBC1D3L gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of TBC1D3L gene from the GTEx eQTL 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of TBC1D3L gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of TBC1D3L gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of TBC1D3L gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of TBC1D3L gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of TBC1D3L protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving TBC1D3L protein from the WikiPathways Pathways 2024 dataset. | |