| Name | TEN1-CDK3 readthrough (NMD candidate) |
| Description | This locus represents naturally occurring read-through transcription between the neighboring TEN1 telomerase capping complex subunit homolog (S. cerevisiae) and cyclin-dependent kinase 3 (CDK3) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Oct 2011] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe study detailed in the provided abstract (PMID:"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "characterizes a tetratricopeptide repeat (TPR) protein, Ttc36, in mouse tissues. Although the abstract does not mention TEN1‐CDK3 directly, it offers insights that can inform our understanding of protein functions in similar molecular families. Ttc36 is evolutionarily conserved and exhibits developmentally regulated expression in organs including the liver, kidney, and testis.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nImmunofluorescence analyses reveal a diffuse expression of Ttc36 in the liver, whereas in the kidney its localization is restricted specifically to the cortex of the proximal tubules. This was clarified by its co‐localization with Lotus Tetragonolobus Lectin—a marker for proximal tubules—contrasting with the lack of overlap with the distal tubule marker Calbindin-D28k."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Such spatially confined expression patterns suggest a role in regulating cell functions that are unique to these tissue regions.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough TEN1-CDK3 itself is not directly addressed in this work, the reported tissue-specific expression and precise subcellular targeting of Ttc36 imply that proteins within related functional modules may partake in specialized regulatory roles in renal proximal tubule biology and possibly in cellular differentiation processes. Further studies will be needed to determine whether TEN1-CDK3 shares similar localization characteristics or participates in related signaling pathways, as suggested by the organizational themes observed in Ttc36."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuru Zhou, Qingling He, Jihui Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The expression patterns of Tetratricopeptide repeat domain 36 (Ttc36)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gep.2016.11.001"}], "href": "https://doi.org/10.1016/j.gep.2016.11.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27826126"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27826126"}]}]}]}
|
| Synonyms | TEN1, C17ORF106-CDK3 |
| NCBI Gene ID | 100529145 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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TEN1-CDK3 has 1,492 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for TEN1-CDK3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of TEN1-CDK3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at TEN1-CDK3 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of TEN1-CDK3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of TEN1-CDK3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of TEN1-CDK3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of TEN1-CDK3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of TEN1-CDK3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at TEN1-CDK3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |