TPTEP1 Gene

Name transmembrane phosphatase with tensin homology pseudogene 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn glioma, TPTEP1 acts as a tumor‐suppressive long noncoding RNA by attenuating cancer stemness and radioresistance. Mechanistic studies showed that TPTEP1 increases the expression of MAPK14 via a competitive interaction with miR‑106a‑15p, thereby activating the P38 MAPK signaling pathway. This regulation ultimately suppresses glioma progression, and reduced expression of TPTEP1 associates with higher tumor grade and poorer prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn non‑small cell lung cancer (NSCLC), TPTEP1 is also markedly downregulated. Overexpression of TPTEP1 in NSCLC cells inhibits cell proliferation and triggers apoptosis. The underlying mechanism involves TPTEP1 acting as a molecular sponge for miR‑328‑5p, which leads to the upregulation of SRCIN1 and subsequent inactivation of Src and STAT3 signaling pathways. This highlights TPTEP1’s tumor‑suppressive function in NSCLC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nInvestigations into diabetic retinopathy (DR) have focused on the role of TPTEP1 as well. Although the precise mechanisms remain to be fully elucidated, emerging studies are examining how dysregulation of TPTEP1 may contribute to the vascular and cellular pathology observed in DR, suggesting a possible regulatory role in this diabetic complication."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn gastric cancer, current evidence indicates that the function of TPTEP1 has not yet been reported, uncovering an area for future research to determine whether TPTEP1 might also have clinical relevance in this malignancy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn ovarian cancer, TPTEP1 is significantly downregulated compared with normal ovarian tissues. Functional studies reveal that TPTEP1 exerts its tumor‐suppressive effects by directly binding to the PTBP1 protein, which results in the inhibition of the PI3K/AKT signaling pathway. This leads to reduced cell proliferation, migration, and invasion, while promoting apoptosis. These findings point to the potential of TPTEP1 as both a prognostic biomarker and a therapeutic target in ovarian cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ting Tang, Ling-Xing Wang, Mei-Li Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA TPTEP1 inhibits stemness and radioresistance of glioma through miR‑106a‑5p‑mediated P38 MAPK signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2020.11542"}], "href": "https://doi.org/10.3892/mmr.2020.11542"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33173989"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33173989"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Feng Cao, Zhiguo Wang, Yong Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA TPTEP1 competitively sponges miR‑328‑5p to inhibit the proliferation of non‑small cell lung cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2020.7522"}], "href": "https://doi.org/10.3892/or.2020.7522"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32323798"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32323798"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaoping Sun, Yuebing Lu, Tao Lei "}, {"type": "b", "children": [{"type": "t", "text": "TPTEP1 suppresses high glucose-induced dysfunction in retinal vascular endothelial cells by interacting with STAT3 and targeting VEGFA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Diabetol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00592-020-01663-w"}], "href": "https://doi.org/10.1007/s00592-020-01663-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33576890"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33576890"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xinfa Wang, Xianbo Zhou, Fang Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA TPTEP1 suppresses diabetic retinopathy by reducing oxidative stress and targeting the miR-489-3p/NRF2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Biochim Pol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18388/abp.2020_6034"}], "href": "https://doi.org/10.18388/abp.2020_6034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36795778"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36795778"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "You Huang, Jun Wang, Hangsheng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA TPTEP1 inhibits the migration and invasion of gastric cancer cells through miR-548d-3p/KLF9/PER1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2022.154054"}], "href": "https://doi.org/10.1016/j.prp.2022.154054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35985238"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35985238"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yifan Feng, Zhe Zhang, Huijun Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA TPTEP1 suppresses PI3K/AKT signalling and inhibits ovarian cancer progression by interacting with PTBP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.70106"}], "href": "https://doi.org/10.1111/jcmm.70106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39422584"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39422584"}]}]}]}
Synonyms PSITPTE22
NCBI Gene ID 387590
API
Download Associations
Predicted Functions View TPTEP1's ARCHS4 Predicted Functions.
Co-expressed Genes View TPTEP1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TPTEP1's ARCHS4 Predicted Functions.

Functional Associations

TPTEP1 has 1,586 functional associations with biological entities spanning 5 categories (molecular profile, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for TPTEP1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of TPTEP1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of TPTEP1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of TPTEP1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of TPTEP1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TPTEP1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of TPTEP1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of TPTEP1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TPTEP1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TPTEP1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of TPTEP1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of TPTEP1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of TPTEP1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of TPTEP1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TPTEP1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with TPTEP1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with TPTEP1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of TPTEP1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of TPTEP1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of TPTEP1 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of TPTEP1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TPTEP1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of TPTEP1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.