TRAPPC2B Gene

Name trafficking protein particle complex 2B
Description Enables transcription corepressor binding activity; transcription regulator inhibitor activity; and transmembrane transporter binding activity. Involved in positive regulation of gene expression and skeletal system development. Located in endoplasmic reticulum; nucleus; and perinuclear region of cytoplasm. Part of TRAPP complex. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTRAPPC2B, also recognized as MIP‑2A, acts as a transcriptional cofactor that modulates gene expression by interacting with established transcriptional regulators. Originally identified through its association with MBP‑1—a transcriptional repressor—TRAPPC2B appears to relieve MBP‑1–mediated repression, suggesting it plays a role in fine‐tuning transcriptional outputs. Its expression is highly tissue‑specific, being most abundant in the right cerebellum, pituitary, adrenal gland, and testis while remaining nearly undetectable in skeletal muscle. In the pituitary gland, TRAPPC2B exerts a negative regulatory effect on the luteinizing hormone beta (LHβ) gene by physically interacting with the transcription factors SF‑1 and Ptx1, thereby inhibiting their synergistic activation of the LHβ promoter. These findings indicate that TRAPPC2B is involved in modulating hormone gene transcription and contributes to tissue‑specific transcriptional regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Asish K Ghosh, Robert Steele, Ratna B Ray "}, {"type": "b", "children": [{"type": "t", "text": "Modulation of human luteinizing hormone beta gene transcription by MIP-2A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M211982200"}], "href": "https://doi.org/10.1074/jbc.M211982200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12700240"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12700240"}]}]}]}
Synonyms SEDLP1, SEDLP
Proteins TPC2B_HUMAN
NCBI Gene ID 10597
API
Download Associations
Predicted Functions View TRAPPC2B's ARCHS4 Predicted Functions.
Co-expressed Genes View TRAPPC2B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TRAPPC2B's ARCHS4 Predicted Functions.

Functional Associations

TRAPPC2B has 262 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for TRAPPC2B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with TRAPPC2B gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of TRAPPC2B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of TRAPPC2B gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with TRAPPC2B gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with TRAPPC2B gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
GO Biological Process Annotations 2023 biological processes involving TRAPPC2B gene from the curated GO Biological Process Annotations 2023 dataset.
GO Cellular Component Annotations 2023 cellular components containing TRAPPC2B protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by TRAPPC2B gene from the curated GO Molecular Function Annotations 2023 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of TRAPPC2B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of TRAPPC2B gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by TRAPPC2B gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by TRAPPC2B gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of TRAPPC2B gene from the Rummagene Transcription Factor Associations 2026 dataset.