Small molecules which reverse colon adenoma
Canned Analysis
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General Information
AccessionDCA00009619
TitleSmall molecules which reverse colon adenoma
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which reverse the colon adenoma gene expression signature in the Colon biopsy cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d1bf03e467bea600fb8450
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:550
Cell TypeColon biopsy
DO IDDOID:0050912
Disease Namecolon adenoma
Organismhuman
L1000CDS2 parameters
Directionreverse
Characteristic Direction parameters
Control SamplesGSM95473, GSM95474, GSM95475, GSM95476, GSM95477, GSM95478, GSM95479, GSM95480
Perturbed SamplesGSM95481, GSM95482, GSM95483, GSM95484, GSM95485, GSM95486, GSM95487, GSM95488, GSM95489, GSM95490, GSM95491, GSM95493, GSM95494, GSM95495
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE4183
Gene Expression Omnibus
Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature
21
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