Small molecules which mimic HIV encephalitis
Canned Analysis
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General Information
AccessionDCA00009640
TitleSmall molecules which mimic HIV encephalitis
DescriptionThe L1000 database was queried in order to identify small molecule perturbations which mimic the HIV encephalitis gene expression signature in the frontal cortex cell type.
Analysis URLhttp://amp.pharm.mssm.edu/L1000CDS2/#/result/58d1bdd5e467bea600fb83ba
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJoel.Dudley
CREEDS IDdz:2
Cell Typefrontal cortex
Disease NameHIV encephalitis
Organismhuman
UMLS CUIC0276548
L1000CDS2 parameters
Directionmimic
Characteristic Direction parameters
Control SamplesGSM79036, GSM79043, GSM79044, GSM79045, GSM79046, GSM79047, GSM79048, GSM79049, GSM80003, GSM80004, GSM80005, GSM80006
Perturbed SamplesGSM79050, GSM79051, GSM79053, GSM79055, GSM79056, GSM79059, GSM79060, GSM79062, GSM80007, GSM80008, GSM80009, GSM80010, GSM80011, GSM80012, GSM80013, GSM80014
Tools used in the analysis
Dataset Accession
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE3489
Gene Expression Omnibus
HIV encephalitis: brain frontal cortex
7
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