Interaction network and enrichment analysis of genes upregulated in Acute arthritis
Canned Analysis
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General Information
AccessionDCA00032916
TitleInteraction network and enrichment analysis of genes upregulated in Acute arthritis
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by Acute arthritis and healthy control cells in the Synovial Membrane cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Lum|Col1a1|Col3a1|Spp1|Olfml3|Slpi|Col5a2|Bet1|Fn1|Postn|H2-Aa|Acp5|Tgfbi|S100a8|Lgmn|Antxr1|Lox|Mmp2|Mfap5|C1s|Coro7|Sprr2a|Col11a1|Calu|Vkorc1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJoel.Dudley
CREEDS IDdz:122
Cell TypeSynovial Membrane
Disease NameAcute arthritis
Organismmouse
UMLS CUIC0263678
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM29441, GSM29442
Perturbed SamplesGSM29437, GSM29438
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE2178
Gene Expression Omnibus
Mouse Expression DB 2001 CHMC
21
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