Interaction network and enrichment analysis of genes upregulated in breast cancer
Canned Analysis
FAIR Metrics
0 evaluations
General Information
AccessionDCA00033214
TitleInteraction network and enrichment analysis of genes upregulated in breast cancer
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by breast cancer and healthy control cells in the Sections from non-Basal Like Cancer specimens cell type.
Analysis URLhttp://genemania.org/#/search/human/IGHV4-31|COX6C|NTS|S100A7|GAPDH|CPB1|LDHA|TSPAN13|HSPB1|HSP90AA1|S100A9|CHGB|TMSB10|SRP9|SLC39A6|H2AFZ|NME1|PTMA|HIST2H2AA4|CD24|MIEN1|MAL2|TUBA1C|S100P|H3F3AP4
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:978
Cell TypeSections from non-Basal Like Cancer specimens
DO IDDOID:1612
Disease Namebreast cancer
Organismhuman
UMLS CUIC1458155
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM85513, GSM85514, GSM85515, GSM85516, GSM85517, GSM85518, GSM85519
Perturbed SamplesGSM85493, GSM85494, GSM85495, GSM85496, GSM85497, GSM85498, GSM85499, GSM85500, GSM85501, GSM85502, GSM85503, GSM85504, GSM85505, GSM85506, GSM85507, GSM85508, GSM85509, GSM85510, GSM85511, GSM85512
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE3744
Gene Expression Omnibus
Basal-like breast cancer tumors
21
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.