Interaction network and enrichment analysis of genes upregulated in invasive ductal carcinoma
Canned Analysis
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General Information
AccessionDCA00034006
TitleInteraction network and enrichment analysis of genes upregulated in invasive ductal carcinoma
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by invasive ductal carcinoma and healthy control cells in the Invasive ductal carcinoma (IDC) cells, and their normal counterpart cell type.
Analysis URLhttp://genemania.org/#/search/human/CPB1|IGHV4-31|ND2|RPL9|HEBP1|COX2|CYAT1|SH3KBP1|NDUFA4|COX3|RPS20|PABPC3|RPL36A|RPL27|C6orf211|RPL19|RPL30|NME1|RPS18|RPS29|OAZ1|ADIPOR2|PSMB3|RPL24|MIEN1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:626
Cell TypeInvasive ductal carcinoma (IDC) cells, and their normal counterpart
DO IDDOID:3008
Disease Nameinvasive ductal carcinoma
Organismhuman
UMLS CUIC1527349
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM134584, GSM134588, GSM134687, GSM134690, GSM134693, GSM134696, GSM134699, GSM134702, GSM134705, GSM134708
Perturbed SamplesGSM134698, GSM134701, GSM134704, GSM134707, GSM134710
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE5764
Gene Expression Omnibus
Invasive ductal and lobular breast carcinomas
7
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