Interaction network and enrichment analysis of genes downregulated in Sendai virus infection
Canned Analysis
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General Information
AccessionDCA00034379
TitleInteraction network and enrichment analysis of genes downregulated in Sendai virus infection
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most downregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by Sendai virus infection and healthy control cells in the Tracheal epithelium cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Dstn|Tmem119|Acaa2|Selenbp1|Ces1d|Prdx6|Serpine1|Chchd10|Rps11|Atp5c1-ps|Degs1|Actg1|Cyb5a|Cyp2b10|Cox6a1|Rpl3|Rpl5|Cd164|Lgals3|Rsph3b|Itm2b|Rplp0|Cbr1|Calml4|Mgst1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJoel.Dudley
CREEDS IDdz:82
Cell TypeTracheal epithelium
Disease NameSendai virus infection
Organismmouse
UMLS CUIC1319860
Characteristic Direction parameters
Gene Setdownregulated
Gene Set Size50
Control SamplesGSM257861, GSM257863, GSM257864, GSM257867, GSM257869, GSM257870
Perturbed SamplesGSM257862, GSM257865, GSM257866, GSM257868
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE10211
Gene Expression Omnibus
Airway epithelial cells response to Sendai virus infection in vitro
7
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