Interaction network and enrichment analysis of genes upregulated in oligodendroglioma
Canned Analysis
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General Information
AccessionDCA00034446
TitleInteraction network and enrichment analysis of genes upregulated in oligodendroglioma
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by oligodendroglioma and healthy control cells in the Brain tumor tissue samples of human gliomas and normal brain - Grade:OGIII - Primary tumor cell type.
Analysis URLhttp://genemania.org/#/search/human/PTPRZ1|RPLP0|RPLP0P6|RPSA|HEY1|RPL6|TSPAN13|EEF1G|RPL12|HIST1H4C|RPL8|LUZP6|LHFPL3|LINC00461|RPS5|SNX3|ACTG1|RAB31|EIF3E|DBI|HIF1A|EEF2|RPS18|RPS4X|FXYD6
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:859
Cell TypeBrain tumor tissue samples of human gliomas and normal brain - Grade:OGIII - Primary tumor
DO IDDOID:3181
Disease Nameoligodendroglioma
Organismhuman
UMLS CUIC1335110
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM397659, GSM397660
Perturbed SamplesGSM397646, GSM397650, GSM397651
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE15824
Gene Expression Omnibus
Glioblastoma cell lines: LN018, LN215, LN229, LN319 and BS149
35
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