Interaction network and enrichment analysis of genes upregulated in GFAP OE
Canned Analysis
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General Information
AccessionDCA00034476
TitleInteraction network and enrichment analysis of genes upregulated in GFAP OE
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between GFAP OE cells and control cells in the Olfactory bulb of 23 day old cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Mt2|Mt1|Mt3|Fth1|Gm10845|Ctss|Gm20746|Tpt1|C1qa|Prdx6|Apod|Fabp7|Eef1a1|Rpl34|BC094435|Rps27rt|Ctsd|Rpl21|Dhrs1|Prdx6b|C1qc|Rps16-ps2|Ifitm3|Gstp1|B2m
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:281
Cell TypeOlfactory bulb of 23 day old
Gene Symbol (human)GFAP
Gene Symbol (mouse)Gfap
Organismmouse
Perturbation TypeOE
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM15436, GSM15438, GSM15439
Perturbed SamplesGSM15441, GSM15442, GSM15443
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE977
Gene Expression Omnibus
Intermediate filament protein GFAP transgene overexpression effect on olfactory bulb: time course
21
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