Interaction network and enrichment analysis of genes upregulated in Barrett's esophagus
Canned Analysis
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General Information
AccessionDCA00034540
TitleInteraction network and enrichment analysis of genes upregulated in Barrett's esophagus
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by Barrett's esophagus and healthy control cells in the Esophageal squamous epithelium cell type.
Analysis URLhttp://genemania.org/#/search/human/TFF1|AGR2|TSPAN8|EPCAM|B2M|LYZ|LGALS4|TFF2|TMSB4XP8|S100P|CA2|OLFM4|KRT20|ANXA10|LGALS3|KRT19|ANPEP|FABP1|LIPF|CALM2|ANXA4|TSPAN3|S100A6|CEACAM6|AKR1B10
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDdz:917
Cell TypeEsophageal squamous epithelium
DO IDDOID:9206
Disease NameBarrett's esophagus
Organismhuman
UMLS CUIC0004763
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM327642, GSM327643, GSM327644, GSM327645, GSM327646, GSM327647, GSM327648
Perturbed SamplesGSM327649, GSM327650, GSM327651, GSM327652, GSM327653, GSM327654, GSM327655
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE13083
Gene Expression Omnibus
Barrett's esophagus
7
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