Interaction network and enrichment analysis of genes upregulated in MYOD1 Mutation - MyoD altered at lysine residues 99, 102, and 104, ren
Canned Analysis
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General Information
AccessionDCA00036666
TitleInteraction network and enrichment analysis of genes upregulated in MYOD1 Mutation - MyoD altered at lysine residues 99, 102, and 104, ren
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between MYOD1 Mutation - MyoD altered at lysine residues 99, 102, and 104, ren cells and control cells in the Embryonic fibroblasts - 12 Hours cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Crabp1|Lgals3|Ptma|Spp1|S100a6|Mmp3|Dpt|Gm4076|Rpl36a|Gsto1|Il1rl1|Ccl2|Vim|Pdpn|Cyb5a|Hint1|Akap12|Nptx1|Tmem176b|Arhgdib|Anp32b|Gm2710|Nme1|Rpl39-ps|Basp1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:1179
Cell TypeEmbryonic fibroblasts - 12 Hours
Gene Symbol (human)MYOD1
Gene Symbol (mouse)Myod1
Organismmouse
Perturbation TypeMutation - MyoD altered at lysine residues 99, 102, and 104, ren
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM148425, GSM148436, GSM148449
Perturbed SamplesGSM148421, GSM148423, GSM148439
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE6487
Gene Expression Omnibus
Myogenic transcription factor MyoD mutant expression effect on embryonic fibroblast: time course
14
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