Interaction network and enrichment analysis of genes upregulated in CTCF DEPLETION
Canned Analysis
FAIR Metrics
0 evaluations
General Information
AccessionDCA00036768
TitleInteraction network and enrichment analysis of genes upregulated in CTCF DEPLETION
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between CTCF DEPLETION cells and control cells in the germinal vesicle (GV) oocytes cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Gm4354|Flot1|Dusp1|Map3k6|BC094435|LOC100048117|Mrps16|Dppa5a|1700021F07Rik|Rpia|Ttc34|Lmo1|Gm10632|LOC664787|Slc3a2|Fbxw19|Pop7|Hmgn3|Mfsd2a|Mapk1ip1|Lrwd1|Tprgl|Fbxw16|Carm1|Znrd1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:124
Cell Typegerminal vesicle (GV) oocytes
Gene Symbol (human)CTCF
Gene Symbol (mouse)Ctcf
Organismmouse
Perturbation TypeDEPLETION
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM296254, GSM296255, GSM296256, GSM296257, GSM296259
Perturbed SamplesGSM296250, GSM296251, GSM296252, GSM296253, GSM296261
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE11664
Gene Expression Omnibus
CTCF depletion effect in oocytes
7
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.