Interaction network and enrichment analysis of genes downregulated in H19 Depletion - siRNA
Canned Analysis
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General Information
AccessionDCA00036783
TitleInteraction network and enrichment analysis of genes downregulated in H19 Depletion - siRNA
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most downregulated genes identified by applying the Characteristic Direction method comparing gene expression between H19 Depletion - siRNA cells and control cells in the C2C12 cell type.
Analysis URLhttp://genemania.org/#/search/mouse/H19|Mir675|Dcn|Spp1|Malat1|Grem1|S100a4|Ppic|Mgp|Ank|Cd34|Gas1|Stx12|Cxcl5|Tmbim4|Xist|Fmo1|Antxr2|Dpy19l1|Fgf7|S100a10|Enpp1|Tprgl|Nid1|Colec12
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorsolomoniyi
CREEDS IDgene:1256
Cell TypeC2C12
Gene Symbol (human)H19
Organismmouse
Perturbation TypeDepletion - siRNA
Characteristic Direction parameters
Gene Setdownregulated
Gene Set Size50
Control SamplesGSM1201434, GSM1201435, GSM1201436
Perturbed SamplesGSM1201437, GSM1201438, GSM1201439
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE49535
Gene Expression Omnibus
Long non-coding RNA H19 depletion effect on myoblast cell line
7
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