Interaction network and enrichment analysis of genes upregulated in MET KO
Canned Analysis
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General Information
AccessionDCA00037196
TitleInteraction network and enrichment analysis of genes upregulated in MET KO
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between MET KO cells and control cells in the CD9+ trophoblast cells cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Ctla2a|Ceacam14|1600012P17Rik|Hba-a2|Ctla2b|Col4a2|Ceacam11|Creg1|Prl8a9|Prl3b1|Tpbpb|Ceacam12|Ghrh|Prl7d1|Ahsp|Hba-x|Col4a1|Prl4a1|Ceacam13|Pappa2|Prl2b1|Ctsq|Prl2c4|Prl7a2|Gpx1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorFabioAmaral
CREEDS IDgene:1500
Cell TypeCD9+ trophoblast cells
Gene Symbol (human)MET
Gene Symbol (mouse)Met
Organismmouse
Perturbation TypeKO
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM940333, GSM940334
Perturbed SamplesGSM940335, GSM940336
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE38342
Gene Expression Omnibus
E12.5 CD9+ Mouse Placental Trophoblast Microarray, Wild-type vs c-Met KO
7
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