Interaction network and enrichment analysis of genes downregulated in B4GALNT2 OE
Canned Analysis
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General Information
AccessionDCA00037441
TitleInteraction network and enrichment analysis of genes downregulated in B4GALNT2 OE
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most downregulated genes identified by applying the Characteristic Direction method comparing gene expression between B4GALNT2 OE cells and control cells in the gastrocnemius muscle mdx mutant cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Cfd|Rps7|Rpl36a|Rpl11|Mup19|Rpl32|Lyz2|Rps14|Lgals1|S100a4|S100a8|Spp1|Uqcrh|Rpl26|Rps5|Clec4d|Gm10260|Atp5j|Wfdc17|Gm12191|LOC100048884|Acyp2|Tmsb4x|Rpl17-ps10|Gm10335
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcms
CREEDS IDgene:1717
Cell Typegastrocnemius muscle mdx mutant
Gene Symbol (human)B4GALNT2
Gene Symbol (mouse)B4galnt2
Organismmouse
Perturbation TypeOE
Characteristic Direction parameters
Gene Setdownregulated
Gene Set Size50
Control SamplesGSM190645, GSM190646
Perturbed SamplesGSM190643, GSM190644
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE7863
Gene Expression Omnibus
Gene expression profiling of Galgt2 overexpression in mdx skeletal muscle
14
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