Interaction network and enrichment analysis of genes upregulated in MIR128-1 KD
Canned Analysis
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General Information
AccessionDCA00037596
TitleInteraction network and enrichment analysis of genes upregulated in MIR128-1 KD
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between MIR128-1 KD cells and control cells in the E14.5 cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Syt11|Lrrn1|Lmo4|Slc6a11|Ncan|Egr1|Tspan7|Rn18s|Rn28s1|Kifc1|Tmed10|Gpm6a|Copa|Smad5|Ptprz1|Atp1b2|Uevld|Ppap2b|Serinc1|Itgb8|Eif4g2|Sox4|Acadl|Atp6v0b|Eif2s3x
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorstevann
CREEDS IDgene:1808
Cell TypeE14.5
Gene Symbol (human)MIR128-1
Organismmouse
Perturbation TypeKD
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM715835, GSM715836, GSM715837
Perturbed SamplesGSM715838, GSM715839, GSM715840
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE28889
Gene Expression Omnibus
CD-1 neuronal stem cell response to microRNA-128 mimic
7
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